Dorte B. Bekker‐Jensen

Pairing Data Independent Acquisition and High-Resolution Full Scan for Fast Urinary Tract Infection Diagnosis

This paper presents a method combining DIA MS/MS and MS1-only spectra for rapid UTI pathogen identification, achieving high accuracy in both controlled and clinical samples.

High-throughput and scalable single cell proteomics identifies over 5000 proteins per cell

This study improves single-cell proteomics by increasing protein identification from ~2000 to over 5000 per cell and enhancing throughput and reliability.

Fully automated workflow for integrated sample digestion and Evotip loading enabling high-throughput clinical proteomics

The paper presents an automated workflow for proteome and phosphoproteome sample preparation, enabling high-throughput clinical proteomics analysis of metastatic melanoma patients' plasma.

Spatial-proteomics reveal in-vivo phospho-signaling dynamics at subcellular resolution

The paper develops a high-throughput workflow for subcellular proteome and phospho-proteome profiling and applies it to study EGFR signaling and stress responses in cells.

Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses

COSMOS integrates multi-omics data with prior knowledge to generate mechanistic hypotheses about biological processes in renal cell carcinoma.

Alternative translation initiation generates a functionally distinct isoform of the stress-activated kinase MK2

The paper identifies an alternative translation initiation site in MK2 mRNA that generates a long isoform with distinct functional properties compared to the short isoform.