brain atlas

Digital Atlases to Unlock the Potential of Brain Biorepository Tissues for Interdisciplinary Research

The paper introduces a pipeline to create 3D spatial atlases for brain tissue samples, enabling standardized referencing and integration across biorepositories and neuroimaging data.

A Community Standard Multispecies Cell Atlas of the Basal Ganglia

The paper presents a cross-species, multimodal atlas of the basal ganglia using single-cell transcriptomics and integrates epigenomic and spatial genomic data to enable cross-species comparisons.

The BRAIN Initiative Cell Census Data Ecosystem: A User's Guide

The paper provides a guide to the BRAIN Initiative Cell Census Network (BICCN) data ecosystem, its tools, and resources for analyzing brain cell types across species.

An integrated transcriptomic cell atlas of human neural organoids

This paper integrates 36 single-cell transcriptomics datasets from human neural organoids into a unified atlas to assess cell type coverage and compare organoid protocols with primary brain tissue.

Standardizing Human Brain Parcellations

The paper standardizes human brain parcellations by curating and organizing multiple atlases into a single open-source repository with standardized metadata and transformation functions.

A layered standards framework for integrating single-cell and spatial omics data into brain cell atlases

This paper introduces a standards framework for integrating single-cell and spatial omics data into brain cell atlases, enabling interoperable and reusable knowledge-ready resources.

Whole Human-Brain Mapping of Single Cortical Neurons for Profiling Morphological Diversity and Stereotypy

The paper maps single cortical neurons across the human brain to profile morphological diversity and stereotypy using a new tomography approach.

Long-term human organotypic brain slice cultures: a detailed protocol to provide a comprehensive framework for single-neuron and neuronal network investigations

This paper provides a detailed protocol for long-term human organotypic brain slice cultures, enabling extended electrophysiological studies and viral transduction.