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- experimental assay 49,492
- cell type annotation 24,744
- statistical model 18,038
- differential expression 17,045
- host-pathogen & immune response 11,777
- bulk RNA-seq 11,555
- human 11,165
- proteomics 9,811
- gene regulatory network inference 8,764
- imaging 6,412
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- drug response / drug discovery 5,600
1,000+ papers
- Systems BiologybioRxivPreprint
Intestinal molecular siphoning by engineered bacterial spores for non-systemic treatment of nicotine addiction
Xisheng Xiong, Ruiqi Zhu, Yueqing Han…·Yijun Chen
This paper develops a live bacterial system to reduce nicotine levels in blood and brain by enzymatic degradation in the gut, showing potential for non-systemic treatment of nicotine addiction.
DOI 10.64898/2026.11.03.763521 - BioengineeringbioRxivPreprint
N-GLYcanyzer monitoring of a microperfusion process reveals critical parameters' impact on Trastuzumab biosimilar N-glycoform time evolution
Aditya Narvekar, Malcolm Harrison, Rahul Thakur…·Shishir P.S. Chundawat
The paper uses N-GLYcanyzer to monitor Trastuzumab biosimilar N-glycoform changes in a microperfusion process, identifying key parameters affecting glycoform evolution.
DOI 10.64898/2026.10.31.763318 - Developmental BiologybioRxivPreprint
Optimizing the efficiency of assisted reproduction procedures in the common marmoset (Callithrix jacchus) improved IVF outcomes
Rebecca A Holton, Joshua T Brennan, Sophia I Lipari…·Xiaoqin Wang
This study optimizes IVF procedures in common marmosets by identifying factors like progesterone levels and stimulation duration that improve embryo development and implantation rates.
DOI 10.64898/2026.10.30.763070 - NeurosciencebioRxivPreprint
GFRAL neurons remodel intestinal structure and type 2 immunity
Danielle van de Lisdonk, Onur Eskiocak, Zachary Kerner…·Bo Li
This study shows that GFRAL neurons in the brainstem regulate intestinal structure and type 2 immunity through a vagal circuit, affecting food allergy, helminth infection, and colitis.
DOI 10.64898/2026.10.28.762646 - Cell BiologybioRxivPreprint
Bispecific VSV-G Engagers: A Platform for Cell-Type-Specific Delivery of Viral Vectors
Gopal Naik Nenavath, Diana Gataulin, Miriam Eisenstein…·Menachem Rubinstein
This paper develops bispecific VSV-G engagers to enable cell-type-specific delivery of viral vectors, demonstrating effectiveness in targeting tumor cells and generating CAR T cells.
- Pharmacology & ToxicologybioRxivPreprint
Distinct antischistosomal profiles of antimalarials and TRP agonists
Nicolas J. Wheeler, Mostafa Zamanian, John D Chan
This study compares the antischistosomal effects of antimalarials and TRP agonists using RNA-seq and efficacy tests in mice, finding distinct transcriptional responses and retained activity against praziquantel-resistant parasites.
DOI 10.64898/2026.10.29.761559 - NeurosciencebioRxivPreprint
Distinct processing of visual motion by transcriptomic cell types in the superior colliculus
Chen Chen, Yuanming Liu, Delaney G Eaves…·Jianhua Cang
The paper identifies how three transcriptomic cell types in the superior colliculus process visual motion with distinct feature selectivity, morphology, and connectivity.
- GenomicsbioRxivPreprint
Local chromatin, 3D genome folding and transposon cargo shape Sleeping Beauty transposition
Christina J.I. Moene, Mathias Eder, Lise Dauban…·Bas van Steensel
This study identifies factors influencing Sleeping Beauty transposition, showing chromatin context, cargo size, and transcriptional activity affect efficiency and reintegration patterns.
- GenomicsbioRxivPreprint
Shared and divergent features of the immune response to acute and chronic Trypanosoma cruzi infection in mice revealed by cardiac transcriptomics
Francisco Olmo, Shiromani Jayawardhana, Martin C Taylor…·Amanda F Francisco
This study uses cardiac transcriptomics in mice to compare immune responses during acute and chronic Trypanosoma cruzi infection, identifying shared and divergent features.
DOI 10.64898/2026.11.02.763600 - NeurosciencebioRxivPreprint
Distinct medial septal GABAergic pathways differentially regulate spatial memory and network activity
Duncan Archibald Allan MacLaren, Khalid Magomedovich Saidov, Magdalene Isabell Schlesiger, Hannah Monyer
The paper identifies distinct septal GABAergic pathways regulated by PV+ and CB+ neurons, showing they differentially support spatial memory and network activity.
DOI 10.64898/2026.11.01.763440 - Cancer BiologybioRxivPreprint
Endogenous PROM1 activation redistributes liver cancer cells along a preexisting differentiation axis
Tom Schneider, Kota Kaneko, Marion Vogl…·Alexander Scheiter
The paper shows PROM1 activation in liver cancer cells shifts their state along a preexisting differentiation axis, suggesting CD133's role extends beyond being a stem-like marker.
- NeurosciencebioRxivPreprint
Systematic Spike Sorting Errors Revealed by Juxtacellular Ground Truth in the Awake Brain
Zach Saccomano, Behnaz Khaghani, Reagan Bullins Shugg…·Daniel F English
The paper evaluates spike sorting errors in awake mice using ground-truth data and finds that false negatives increase significantly during bursting and spike overlaps, challenging conventional benchmarks.
DOI 10.64898/2026.10.29.762918 - ImmunologybioRxivPreprint
Anti-TGFβ peptide P144 augments CAR-T cell efficacy through neutrophil recruitment and TME remodeling in malignant mesothelioma
R. Bugda, E. Hawkins, G. Box…·Astero Klampatsa
This paper shows that delivering the anti-TGFβ peptide P144 via CAR-T cells enhances their efficacy in mesothelioma by recruiting neutrophils and remodeling the tumor microenvironment.
DOI 10.64898/2026.10.28.762702 - NeurosciencebioRxivPreprint
Ultradeep optical coherence tomography
Santosh Balakrishnan, Gauri Arora, Steven G Adie
This paper introduces ultradeep OCT to image deep brain structures with improved depth and resolution, demonstrating its potential for studying neurodegenerative diseases.
DOI 10.64898/2026.10.28.762671 - NeurosciencebioRxivPreprint
Functional ultrasound imaging in free-moving marmosets reveals that intra-call prosodic features modulate large-scale cortical dynamics
Xiaochun Cheng, Yichao Luo, Bingqing Wang…·Zhifeng Liang
This study uses functional ultrasound imaging in marmosets to show that intra-call prosodic features influence large-scale cortical dynamics during vocal interactions.
- ImmunologybioRxivPreprint
Serial intravascular labeling resolves dynamic decidual NK residency and gestational remodeling toward T-bet-Low states
Mona A Mohamed, Jessica Vazquez, Marco A Cordero…·Aleksandar K Stanic
This study uses serial intravascular labeling to show dynamic changes in decidual NK cell residency and T-bet expression during pregnancy.
DOI 10.64898/2026.10.28.762610 - NeurosciencebioRxivPreprint
DPYD links glial lipids and myelination to sleep duration
Amber J Zimmerman, Samantha Deal, Erika Almeraya Del Valle…·Allan I Pack
This study identifies DPYD's role in sleep regulation through glial lipid metabolism and myelination across species, linking genetic variants to oligodendrocyte-specific control.
- Cell BiologybioRxivPreprint
Serotonin signals through ciliary 5-HT6 to control insulin secretion
Shannon E Townsend, Jeong Hun Jo, Morgan Opp…·Jing W. Hughes
This study shows that the 5-HT6 receptor in pancreatic beta cells, localized to cilia, enhances insulin secretion, highlighting ciliary localization as a key determinant of GPCR function.
DOI 10.64898/2026.10.30.763155 - PhysiologybioRxivPreprint
Locus Coeruleus activity correlates with transient elevations in breathing during opioid-induced respiratory depression
Caroline C. Szujewski, Jaseph Soto-Perez, Anmin Yang…·Alfredo J. Garcia
This study shows that fentanyl increases locus coeruleus bursts and transient breathing elevations, with divergent respiratory responses after repeated opioid use.
DOI 10.64898/2026.11.02.763547 - Developmental BiologybioRxivPreprint
Species-specific WNT requirements shape somite morphogenesis in mammalian embryo models
Charlotte Knight, Luke Simpson, Cinzia Allegrucci…·Ramiro Alberio
This study compares somitogenesis across human, pig, sheep, and cow stem cell-derived embryo models, revealing species-specific WNT signaling and extracellular matrix requirements for axial segmentation.
- ImmunologybioRxivPreprint
Antibiotics drive immunometabolic rewiring of human immune responses
Shelly Hen-Avivi, Noa Bossel Ben-Moshe, Ravit Avera…·Roi Avraham
This study examines how antibiotics affect immune cell function by altering mitochondrial activity, showing antibiotic-specific immunomodulatory effects in humans and mice.
- Animal Behavior & CognitionbioRxivPreprint
Ranging and territoriality in African Apes
Martin Surbeck, Rebecca Supple, Anthony P Massaro…·Michael L Wilson
The paper compares ranging and territoriality among African apes, finding that economic defendability does not fully explain interspecific variation in territorial behavior.
DOI 10.64898/2026.11.03.763879 - NeurosciencebioRxivPreprint
Pain Matters: Nociceptive signaling drives neural encoding of inflammatory responses
Megan Sammons, Rani Assa Polansky, Itay Zayalat…·Asya Rolls
The paper shows that nociceptive signaling is essential for the brain to represent and replay inflammatory states using human fMRI and mouse activity mapping.
- Cell BiologybioRxivPreprint
LplA-mediated rescue of lethal myopathy and cardiomyopathy in mitochondrial lipoylation-deficient mammalian caused by Lipt1
Junru Yu, Zhijuan Hu, Ziwei Liu…·Anping Zeng
This study uses AAV-delivered LplA to rescue lethal mitochondrial lipoylation defects in Lipt1-deficient mice, improving survival, motor function, and cardiac health.
DOI 10.64898/2026.11.01.761485 - PhysiologybioRxivPreprint
Latent Transforming Growth Factor Binding Protein-2 promotes microfibrillar TGF-β bioavailability to drive pathologic fibrosis in remote regions of infarcted hearts
Fahad Ehsan, Michelle Di Paola, Micael Dewar…·Scott P Heximer
This study shows that LTBP2 promotes fibrosis in remote myocardium after MI by sequestering latent TGF-β, and its deletion reduces fibrosis and improves cardiac function.
DOI 10.64898/2026.10.28.762676 - NeurosciencebioRxivPreprint
Visual-cortex-projecting neurons in mouse auditory cortex show distinct audiovisual responses independent of motor-related activity
Sietse Kiewiet, Umberto Olcese, Cyriel M.A. Pennartz
The paper identifies AC-to-V1 projecting neurons in mice and shows they have distinct audiovisual responses independent of motor activity.
DOI 10.64898/2026.10.29.757229 - NeurosciencebioRxivPreprint
Reaction-time asymmetry covaries with shifts in hand choice in macaques
Charles D Holmes, Suhwan Hong, Sergei Gepshtein…·Eric Mooshagian
This study shows that macaque hand choice and reaction time are influenced by target position, hand displacement, head rotation, and gaze direction, similar to human behavior.
- PhysiologybioRxivPreprint
An LRH-1 agonist reverses hepatic metabolic dysfunction in obesity
Suzanne G Mays, André R Cuevas, Racheal M Spurlin…·John W Calvert
This study develops an LRH-1 agonist that improves insulin sensitivity and reduces liver fat in obese mice, revealing peroxisomal lipid metabolism as a key pathway.
DOI 10.64898/2026.10.28.761933 - Cell BiologybioRxivPreprint
Calcium and actomyosin pulses drive tricellular zipping to remodel epithelial cell-cell junctions and facilitate cell packing
Babli Adhikary, Xinran O Zhao, Ashley Shahi…·Ann L Miller
The paper identifies tricellular zipping as a mechanism for epithelial junction remodeling, driven by calcium and actomyosin pulses, and shows its role in cell packing across Xenopus, mouse, and Drosophila embryos.