benchmarking

Does Balance Vary Across the Menstrual Cycle?: A Meta-Analysis with Implications for Women's Health.

This meta-analysis examines the effect of menstrual cycle phases on balance in women, finding no significant overall effect on static or dynamic balance.

DroneMegaDetector, A Generalised Model For Detecting Large Mammals In Aerial Imagery

The paper introduces a general-purpose object detector for large mammals in aerial drone imagery and evaluates its performance across diverse datasets and conditions.

Evidence-resolved benchmarks separate biological context recognition from direct-partner specificity in protein interaction models

The paper benchmarks protein interaction models to distinguish direct partners from non-binding or noncontacting proteins, showing that context recognition and direct specificity are separable capabilities.

Mitochondrial respiratory complexes, excitation-contraction coupling and mTOR signaling transcriptional programs are dysregulated in cardiometabolic HFpEF

This study identifies transcriptomic changes in HFpEF mouse hearts, showing mitochondrial respiratory complex downregulation, mTOR activation, and excitation-contraction coupling disruption.

CaPri: Bayesian Mendelian randomization for joint estimation of causal and pleiotropic effects

CaPri is a Bayesian Mendelian randomization framework that jointly estimates causal and pleiotropic effects, showing robust performance across varying pleiotropy proportions and real data applications.

Deep learning-based prediction of wall shear stress throughout the cardiac cycle in middle cerebral artery bifurcation aneurysms

This paper develops a deep learning framework called STEP to predict cardiac-cycle wall shear stress in aneurysms using pre-trained steady-flow models and transient fine-tuning.

Noise-Aware Constitutive Compatibility Atlas for Hyperelastic Material Characterization

The paper develops a noise-aware constitutive-response atlas to identify compatible hyperelastic material models within a deformation range and error tolerance, using both synthetic and real-world datasets.

Why 627 BindCraft2 trajectories produced zero binders

The paper reports that two BindCraft2 campaigns produced no binders despite high interface confidence, identifying issues with confidence metrics and a disabled feature.

Therapeutic acute intermittent hypoxia does not alter whole-brain cerebrovascular function in healthy individuals

This study examines the effects of therapeutic acute intermittent hypoxia on cerebrovascular function in healthy individuals and finds no significant changes in whole-brain blood flow or reactivity.

Multidimensional telomere diversity and inheritance at individual and population scales

This paper introduces TeloXplorer, a framework for analyzing telomere features in long-read data, showing how telomere diversity is inherited across species and populations.

Archival data storage using DNA proximity graphs

This paper introduces a DNA-based archival storage method using proximity graphs, achieving high data recovery and significantly lower writing costs compared to existing DNA storage techniques.

AI-ASSISTED NANOMEDICINE REVEALS SYSTEMIC IMMUNE IMPACT IN OVARIAN CANCER METASTASIS

The paper uses AI-assisted surface-enhanced Raman spectroscopy to analyze immune cell responses to ovarian cancer cells and CSCs, revealing distinct biochemical signatures.

Decomposing scanner batch effects and their impact on pathology foundation models

This study decomposes scanner batch effects in pathology foundation models and shows that image corrections based on measured properties improve alignment but do not fully match model representations.

DiffRhyShiny: A Benchmarking-Informed Platform for Differential Rhythmicity Analysis with Dependence-Aware Evidence Integration

The paper benchmarks differential rhythmicity analysis methods and introduces a web platform for robust analysis and visualization of rhythmicity changes.

A Triple-Measure Model for Estimating Cranial-Brain Size Across Age Groups

This paper develops a non-invasive model called the Triple-Measure to estimate endocranial volume, showing better correlation than head circumference alone across age groups.

Joint Variable Selection for Omic Biomarkers in Time-to-Event Data

The paper introduces vampW, a Bayesian method for joint variable selection in omic biomarkers and time-to-event data, showing reduced false discoveries and improved prediction.

Rethink the Sink: Urban cores act as leaky sinks to maintain regional gene flow in coyotes

The paper uses RAD-capture data to analyze gene flow in urban coyotes, finding urban cores act as leaky sinks that maintain regional genetic connectivity.

Sex in the City: Reproductive Behaviors of Dragonflies across an Urban Landscape

This study compares community science and AI-driven observations of dragonfly reproductive behaviors in an urban area, finding strong correlations in species counts but biases in reproductive behavior detection.

Rapid, reversible RNA/DNA precipitation using rare earth ion coordination

This paper introduces NADA and ALGO for rapid, solvent-free RNA/DNA precipitation and recovery, demonstrating their effectiveness in viral RNA and DNA handling.

Proteomics of steady-state and culture-derived human erythropoiesis reveals the dynamics of erythroid stress

This study compares proteomic profiles of steady-state and cultured human erythroid progenitors, revealing how culture-induced stress alters protein expression and erythroid maturation dynamics.

Reference-Gene Stability for RT-qPCR in the Medial Prefrontal Cortex and Hippocampal Subregions of the 5xFAD Mouse Brain

The paper evaluates reference gene stability for RT-qPCR in specific brain regions of 5xFAD mice and recommends gene pairs for accurate normalization.

Nethobench: Forecasting design and conditioning shape the structural realism of generated neural dynamics

Nethobench evaluates neural forecasting models using structural metrics across multiple families, revealing how design choices affect model performance on mouse and human neural data.

A Repulsive Bias in Perceived Heading Away from the Straight-Ahead as Determined by Continuous Psychophysics

This study uses continuous psychophysics in VR to show repulsion away from straight ahead in heading perception, supporting the response-range explanation over egocentric reference frame.

Comparison of Total X-Ray Energy Absorbed by Fibroglandular Tissue and its Mass Derived from Full Field Digital Mammography and Digital Breast Tomosynthesis

This paper compares total x-ray energy absorbed by fibroglandular tissue and its mass from FFDM and DBT, finding strong linear associations with minimal need for quadratic modeling.

DiffuChannel: A Conditional Denoising Diffusion Model that Synthesises Single-Molecule Patch-Clamp Data with Exactly Known Idealisation (Ground Truth)

DiffuChannel generates synthetic single-molecule patch-clamp data with known idealisation using a conditional diffusion model, outperforming GAN-based methods in stability and realism.

Biologically inspired alignment reveals distributed and directionally asymmetric correspondence between rat and human cortices

The paper develops BrainMapping to align rat and human cortices using resting-state fMRI, revealing distributed and directionally asymmetric correspondences between species.

Panvascular-JEPA: Unseen-Structure Evaluation of Factorized Predictive States for Hemodynamic Networks

The paper evaluates predictive models for hemodynamic networks on unseen structures, comparing their performance against known equations and finding neural models underperform compared to traditional methods.

The conservation effectiveness of Indigenous and local community governance

This study compares ecological outcomes of Indigenous and local community governance with conventional approaches, finding community-governed areas perform as well as fully protected areas and better than others.

Trp53 heterozygosity defines novel states impacting tumor plasticity and progression in Kras-initiated non-small cell lung cancer

This study shows that TP53 heterozygosity in Kras-mutant lung cancer affects tumor plasticity and progression, with distinct genomic and survival outcomes compared to complete TP53 loss.

Towards standards for analysing structural variants from short-read whole genome sequencing data

The paper benchmarks structural variant analysis tools on short-read WGS data, finding that ensemble pipelines significantly reduce accuracy compared to individual tools.