Author
J. Zhang
Northeastern University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2023-2023 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 15 mutual co-author links672 papers
Recent·Most cited
- MicrobiologybioRxivPreprintDOI 10.1101/2023.05.16.540999
- Cell BiologybioRxiv
GRK2 Kinases in the Primary Cilium Initiate SMOOTHENED-PKA Signaling in the Hedgehog Cascade
M. F. Walker, J. Zhang, W. Steiner…·B. R. Myers
This study identifies GRK2-mediated phosphorylation of SMO in the primary cilium as a critical step initiating SMO-PKA signaling in the Hedgehog pathway.
DOI 10.1371/journal.pbio.3002685 - MicrobiologybioRxivPreprint
Cell behaviors underlying Myxococcus xanthus aggregate coarsening
P. Murphy, J. Comstock, T. Khan…·O. A. Igoshin
This paper identifies cell behaviors driving aggregate dispersal in Myxococcus xanthus using microscopy and modeling, showing reversal bias changes correlate with aggregate size and genetic control.
DOI 10.1101/2023.05.08.539855 - BioengineeringbioRxiv
Photosynthetic living fibers fabrication from algal-bacterial consortia with controlled spatial distribution
Z. Sun, Z. Di, Y. Zhang…·Z. Yu
This paper develops a co-culture platform to create photosynthetic living fibers using algal-bacterial consortia with controlled spatial distribution for bioremediation and advanced materials.
DOI 10.1021/acsbiomaterials.3c00884 - Pharmacology & ToxicologybioRxivPreprint
Discovery and characterization of highly potent and selective covalent inhibitors of SARS-CoV-2 PLpro
This study identifies and characterizes two covalent PLpro inhibitors, HUP0109 and DX-027, as potential treatments for SARS-CoV-2.
DOI 10.1101/2023.05.02.539082 - Cell BiologybioRxivPreprint
An expanded palette of ATP sensors for subcellular and multiplexed imaging
A. Z. Sahan, E. Youngblood, S. Das…·J. Zhang
The paper develops new ATP biosensors with improved dynamic range and signal-to-noise ratio for subcellular and multiplexed imaging in live cells.
DOI 10.1101/2023.05.01.538722 - BiochemistrybioRxivPreprint
Discovery of microsized RNA-derived RNAs and polypeptides in human cells
X. Huang, H. Wu, W. Zhong…·S. Chen
The paper discovers a new RNA-to-polypeptide pathway involving msRNAs, msdRs, and msdPs, with potential cancer-related applications.
DOI 10.1101/2023.04.24.538138 - ImmunologybioRxivPreprint
A TNF-IL-1 circuit controls Yersinia within intestinal granulomas
R. Matsuda, D. Sorobetea, J. Zhang…·I. E. Brodsky
This study identifies a monocyte-intrinsic TNF-IL-1 circuit that controls Yersinia infection within intestinal granulomas by signaling to non-hematopoietic cells.
DOI 10.1101/2023.04.21.537749 - ImmunologybioRxivPreprint
Metabolic Reprogramming via targeting ACOD1 promotes polarization and anti-tumor activity of human CAR-iMACs in solid tumors
X. Wang, S. Su, Y. Zhu…·J. ZHANG
This study shows that targeting ACOD1 enhances the pro-inflammatory state and anti-tumor activity of human CAR-iMACs in solid tumors.
DOI 10.1101/2023.04.20.537647 - Cell BiologybioRxiv
Aspergillus SUMOylation mutants have normal dynein function but exhibit chromatin bridges
J. Zhang, R. Qiu, B. D. Bieger…·X. Xiang
This study identifies SUMOylation defects in Aspergillus nidulans leading to chromatin bridges during mitosis without affecting dynein function.
DOI 10.1093/genetics/iyad169 - ImmunologybioRxivPreprint
An Aging-Susceptible Circadian Rhythm Controls Cutaneous Antiviral Immunity
S. Kirchner, V. Lei, P. Kim…·J. Zhang
This study identifies a circadian rhythm that regulates antiviral immunity in skin, showing that aging disrupts this rhythm and that circadian enhancers can restore antiviral defenses.
- Cell BiologybioRxiv
Liproxstatin-1 alleviates cartilage degradation by inhibiting chondrocyte ferroptosis in temporomandibular joint
Y. Hu, B. Cheng, J. Zhang…·Y. Luo
This study shows that ferroptosis contributes to TMJOA cartilage degradation and that Lip-1 inhibits this process by reducing ferroptosis markers and oxidative stress in chondrocytes.
DOI 10.1111/boc.202300042 - Evolutionary BiologybioRxiv
Decoupling of evolutionary changes in mRNA and protein levels
D. Jiang, A. L. Cope, J. Zhang, M. Pennell
The paper develops a theoretical model to study coevolution of mRNA and protein levels, finding that stabilizing selection leads to compensatory evolution, while directional selection causes negative correlation across lineages and positive correlation across genes.
DOI 10.1093/molbev/msad169 - Cancer BiologybioRxiv
A positive feedback loop between ZEB2 and ACSL4 regulates lipid metabolism to promote breast cancer metastasis
DOI 10.7554/elife.87510 - Cancer BiologybioRxivPreprint
Characterization of mitotic phenotypes associated with a MYC synthetic lethal compound
Q. Shi, X. Liu, J. Kalashova…·D. Yang
This paper characterizes mitotic phenotypes caused by a MYC synthetic lethal compound, dimethylfasudil, showing cell cycle arrest, mitotic catastrophe, and segregation anomalies.
DOI 10.1101/2023.04.03.535438 - Cell BiologyiSciencePeer-reviewed
Asparagine starvation suppresses histone demethylation through iron depletion
J. Zhang, J. Jiang, S. Srivastava…·J. Fan
This study shows asparagine starvation reduces histone demethylation by depleting labile iron, which is essential for JHDMs function, and this effect is mediated through IREB2 and TFRC regulation.
DOI 10.1016/j.isci.2023.106425 - ImmunologybioRxiv
Vangl2 suppresses NF-κB signaling and ameliorates sepsis by targeting p65 for NDP52-mediated autophagic degradation
J. Lu, J. Zhang, H. Jiang…·X. Yu
This study identifies Vangl2 as a negative regulator of NF-κB signaling in sepsis by promoting autophagic degradation of p65 through NDP52.
DOI 10.7554/elife.87935.4 - Plant BiologybioRxivPreprint
Two haplotype-resolved genomes of highly heterozygous AAB allotriploid bananas provide insights into subgenome asymmetric evolution and banana wilt control
W. Xie, Y. Zheng, W. He…·L. Chen
This study presents haplotype-resolved genomes of triploid bananas, revealing subgenome asymmetric evolution and resistance mechanisms against banana wilt.
DOI 10.1101/2023.03.28.534356 - ImmunologybioRxiv
PIEZO1-mediated mechanosensing governs NK cell killing efficiency and infiltration in three-dimensional matrices
A. K. Yanamandra, J. Zhang, G. Montalvo…·B. Qu
This study shows that PIEZO1-mediated mechanosensing affects NK cell killing efficiency and infiltration in 3D matrices by responding to tumor cell stiffness.
DOI 10.1002/eji.202350693 - Cancer BiologybioRxiv
CDH1 loss defines distinct diffuse-gastric cancer subtype with T cell exhaustion and EZH2 regulon activation
G. Zou, Y. Huang, S. Zhang…·J.-I. Park
This study identifies two distinct subtypes of diffuse-type gastric cancer associated with CDH1 loss, highlighting T cell exhaustion and EZH2 regulon activation.
DOI 10.1084/jem.20230561 - Plant BiologybioRxivPreprint
Widespread readthrough events in plants reveal unprecedented plasticity of stop codons
Y. Zhang, H. Li, Y. Shen…·L. Wu
The paper identifies widespread stop codon readthrough events in plants and reveals the plasticity of stop codons in encoding amino acids.
DOI 10.1101/2023.03.20.533458 - Cell BiologybioRxivPreprint
LIFR recruits HGF-producing neutrophils to promote liver injury repair and regeneration
Y. Deng, Z. Zhao, M. Sheldon…·L. Ma
This study shows that LIFR in hepatocytes regulates neutrophil recruitment and activity to promote liver regeneration through CXCL1-CXCR2 and cholesterol-HGF pathways.
DOI 10.1101/2023.03.18.533289 - BiochemistrybioRxivPreprint
Urine proteomic characterization of active and recovered COVID-19 patients
This study characterizes urine proteomic changes in active and recovered COVID-19 patients, identifying persistent immune and metabolic alterations and potential biomarkers.
DOI 10.1101/2023.03.12.532269 - Pharmacology & ToxicologybioRxivPreprint
Phage administration with repeated intravenous doses leads to faster phage clearance in mammalian hosts
X. Tan, K. Chen, Z. Jiang…·Y. Ma
This study evaluates phage clearance and host responses to repeated intravenous phage doses in rats and monkeys, finding faster clearance and immune activation with repeated administration.
DOI 10.1101/2023.03.10.532150 - BioengineeringbioRxivPreprint
A versatile multimodal optical modality based on Brillouin light scattering and photoacoustic effect
C. Shi, Y. Yan, M. Mehrmohammadi, J. Zhang
This paper introduces a new multimodal optical imaging technique combining Brillouin and photoacoustic microscopy to measure mechanical, optical, and acoustical properties of biological samples with high resolution.
DOI 10.1101/2023.03.10.532144 - Plant BiologybioRxiv
The ABI3-ERF1 module mediates ABA-auxin crosstalk to regulate lateral root emergence
J. Zhang, P.-X. Zhao, C. Xiang
This study identifies the ABI3-ERF1 module as a key mediator of ABA-auxin crosstalk in regulating lateral root emergence in Arabidopsis.
DOI 10.1016/j.celrep.2023.112809 - BiophysicsbioRxivPreprint
Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation?
H. Zhang, J. Zhang, H. Zhao…·Y. Deng
The paper evaluates deep learning methods for molecular conformation generation by comparing them to a stochastic 'infinite physical monkey' approach, finding that the monkey method outperforms most DL-based methods in coverage and docking success.
DOI 10.1101/2023.03.08.531607 - Plant BiologybioRxivPreprint
Targeted development of diagnostic SNP markers for resistance to Fusarium wilt race 4 in Upland cotton (Gossypium hirsutum)
J. Zhang, Y. Zhu, T. Wheeler…·K. Bissonnette
This study identifies diagnostic SNPs for FOV4 resistance in Upland cotton and finds that specific SNP genotypes correlate with reduced vascular discoloration.
DOI 10.1101/2023.03.06.531315 - Pharmacology & ToxicologybioRxivPreprint
An Integrated Analysis of Network Pharmacology, Molecular Docking, and Experiment Validation to Explore the Mechanism of Danbai Granules in Treating Sequelae of Pelvic Inflammatory Disease
DOI 10.1101/2023.03.05.531232