Author
J. Zhang
Northeastern University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2022-2023 · peak 28/yrCo-Author Collaboration Network
10 top collaborators · 17 mutual co-author links672 papers
Recent·Most cited
- Cell BiologybioRxivPreprint
Enrichment and delivery of target proteins into the cell cytosol via Outer Membrane Vesicles
H. Wang, Z. Tao, X. Zhao…·L. He
This study uses E. coli outer membrane vesicles to deliver target proteins into eukaryotic cells with high efficiency and enables direct labeling of proteins within vesicles.
DOI 10.1101/2023.03.02.530906 - Plant BiologybioRxivPreprint
PRL1 negatively regulates Rho GTPase-independent and -dependent signaling pathways maintaining actin microfilament dynamic for pavement cell morphogenesis
X. Gao, B. Yang, J. Zhang…·Z. Yang
This study identifies PRL1 as a regulator of actin microfilament dynamics in Arabidopsis pavement cells through both Rho GTPase-dependent and -independent pathways.
DOI 10.1101/2023.02.28.530536 - Plant BiologybioRxivPreprint
Epigenetic modifications mediate cultivar-specific root development and metabolic adaptation to nitrogen availability in wheat
DOI 10.1101/2023.02.24.529862 - Evolutionary BiologybioRxiv
Reduced steroid activation of elephant shark GR and MR after inserting four amino acids from the DBD of lamprey corticoid receptor-1
Y. Katsu, J. Zhang, M. E. Baker
The paper inserts four amino acids from lamprey CR1 into elephant shark MR and GR to test if their absence reduces steroid transcriptional activation, finding that the insert decreases activation.
DOI 10.1371/journal.pone.0290159 - Cell BiologybioRxivPreprint
Spatial transcriptomic atlas of shoot organogenesis in tomato callus
X. Song, P. Guo, M. Wang…·B. Li
This study creates a spatial transcriptomic atlas of tomato callus during shoot regeneration, identifying cell types and developmental trajectories.
DOI 10.1101/2023.02.24.529793 - PathologybioRxiv
Piscichuviral encephalitis in marine and freshwater chelonians: first evidence of jingchuviral disease
W. Laovechprasit, K. Young, B. A. Stacy…·J. B. Stanton
This study identifies three novel chuviruses as the cause of lymphocytic meningoencephalomyelitis in three aquatic turtles, providing the first in situ evidence of chuviral pathogenicity in animals.
DOI 10.3201/eid3002.231142 - Cancer BiologybioRxivPreprint
Dying cell-released exosomal CXCL1 promotes breast cancer metastasis by activating TAM/PD-L1 signaling
S. Wang, J. Li, N. Wang…·Z. Wang
This study shows that exosomal CXCL1 from dying breast cancer cells promotes metastasis by activating TAM/PD-L1 signaling and identifies TPCA-1 as a potential inhibitor.
DOI 10.1101/2023.02.23.529643 - Cancer BiologybioRxivPreprint
Multi-omic screening of invasive GBM cells in engineered biomaterials and patient biopsies reveals targetable transsulfuration pathway alterations
J. H. Garcia, E. A. Akins, S. Jain…·M. K. Aghi
This study identifies the transsulfuration pathway as a targetable metabolic driver of glioblastoma invasion through multi-omic analyses of engineered biomaterials and patient biopsies.
DOI 10.1101/2023.02.23.529575 - EcologybioRxiv
Interplay between pollution and avian influenza virus infection risk in shorebirds and waterfowl
T. A. Ross, J. Zhang, M. Wille…·M. Klaassen
The paper investigates the effect of PFAS pollution on AIV infection risk in three bird species, finding no significant association but suggesting further research is needed.
DOI 10.1007/s10393-025-01707-z - Cancer BiologybioRxivPreprint
Multi-omics and Pharmacological Characterization of Patient-derived Glioma Cell Lines
M. Wu, R. Yuan, N. Ji…·J. Chen
This study characterizes 52 patient-derived glioma cell lines with whole-genome sequencing, RNA-seq, and drug response screening, identifying three subtypes and their drug sensitivities and tumorigenic potential.
DOI 10.1101/2023.02.20.529198 - Cell BiologybioRxiv
A cleaved METTL3 potentiates the METTL3-WTAP interaction and breast cancer progression
J. Zhang, C. Yan, J. Xiong…·H. Zhang
This study identifies a cleaved form of METTL3, METTL3a, which enhances METTL3-WTAP interaction and promotes breast cancer progression through m6A methylation and mTOR activation.
DOI 10.7554/elife.87283 - ImmunologybioRxivPreprint
The tetrapeptide sequence of IL-1β regulates its recruitment and activation by inflammatory caspases
P. M. Exconde, C. Hernandez-Chavez, M. B. Bray…·C. Y. Taabazuing
This study identifies that the tetrapeptide sequence of IL-1β regulates its cleavage by non-canonical inflammasomes, revealing a mechanism for inflammation control.
- EcologybioRxiv
Assessment of contaminants, health and survival of migratory shorebirds in natural versus artificial wetlands - the potential of wastewater treatment plants as alternative habitats
T. Ross, J. Zhang, M. Wille…·M. Klaassen
This study compares pollutant exposure, health, and survival of migratory shorebirds in natural and artificial wetlands, finding negligible differences and suggesting wastewater treatment plants could serve as viable habitats.
DOI 10.1016/j.scitotenv.2023.166309 - ImmunologybioRxiv
Comprehensive Multi-omics Analysis Reveals the Core Role of Glycerophospholipid Metabolism in Rheumatoid Arthritis Development
C. Jian, L. Wei, T. Wu…·F. Zeng
This study identifies glycerophospholipid metabolism as a key factor in rheumatoid arthritis development through multi-omics analysis of gut microbiota, metabolites, and gene expression.
DOI 10.1186/s13075-023-03208-2 - BiochemistrybioRxiv
A method for rapid nanobody screening with no bias of the library diversity
L. He, Z. Tao, X. Zhao…·M. Liu
This paper introduces a method for rapid nanobody screening that preserves library diversity without subcloning or amplification bias, producing functional nanobodies against DR5 and Pfu DNA polymerase.
DOI 10.1016/j.isci.2024.108966 - Cancer BiologybioRxiv
Actin dysregulation induces neuroendocrine plasticity and immune evasion: a vulnerability of small cell lung cancer
Y. Seo, S. Zhang, J. Jang…·J.-I. Park
This study shows that CRACD, an actin regulator, suppresses neuroendocrine plasticity and immune evasion in SCLC by modulating NOTCH1 and EZH2 pathways, suggesting EZH2 blockade as a potential therapy.
DOI 10.1038/s41467-025-67078-9 - Cancer BiologybioRxivPreprint
A non-canonical function of LDHB promotes SLC7A11-mediated glutathione metabolism and protects against glutaminolysis-dependent ferroptosis in KRAS-driven lung cancer
L. Zhao, H. Deng, J. Zhang…·R.-W. Peng
This study identifies a non-canonical role of LDHB in protecting KRAS-driven lung cancer from ferroptosis by promoting SLC7A11-mediated glutathione metabolism.
DOI 10.1101/2023.02.12.525859 - BiochemistrybioRxivPreprint
Crystal structures reveal the framework of cis-acyltransferase modular polyketide synthases
A. T. Keatinge-Clay, T. Miyazawa, J. Zhang…·S. N. Lin
The paper presents crystal structures of cis-acyltransferase (cis-AT) modular polyketide synthases (PKSs) to elucidate domain-domain interactions and reaction chamber organization.
DOI 10.1101/2023.02.11.528132 - Cancer BiologybioRxivPreprint
MGA deletion leads to Richter's transformation via modulation of mitochondrial OXPHOS
P. Iyer, B. Zhang, T. Liu…·L. Wang
This study shows that MGA deletion drives Richter's transformation by modulating mitochondrial OXPHOS through the MGA-NME1 axis, suggesting a new therapeutic target.
DOI 10.1101/2023.02.07.527502 - Cancer BiologybioRxiv
Rigosertib promotes anti-tumor immunity via autophagic degradation of PD-L1 in colorectal cancer cells
X. Zhou, D. Fu, H. Yang…·Q. Xiao
Rigosertib promotes anti-tumor immunity by inducing autophagic degradation of PD-L1 in colorectal cancer cells, enhancing immune response and synergizing with checkpoint inhibitors.
DOI 10.1016/j.canlet.2023.216422 - Cell BiologybioRxivPreprint
An ULK1/2-PXN mechanotransduction complex suppresses breast cancer cell migration
P. Liang, J. Zhang, Y. Wu…·B. Wang
This study identifies ULK1/2 as regulators of PXN-dependent mechanotransduction in breast cancer cells, showing their role in inhibiting migration by modulating focal adhesion assembly.
DOI 10.1101/2023.02.03.526950 - Cancer BiologybioRxivPreprint
SCCA1/SERPINB3 promotes suppressive immune environment via STAT-dependent chemokine production, blunting the therapy-induced T cell responses
S. Markovina, L.-Y. Chen, V. Shi…·J. Schwarz
This study shows that SCCA1/SERPINB3 promotes an immunosuppressive tumor microenvironment by increasing chemokine production via STAT signaling, reducing T cell responses to radiotherapy.
DOI 10.1101/2023.02.01.526675 - Cancer BiologybioRxivPreprint
An orally bioavailable 4-phenoxy-quinoline compound as a potent AURKB relocation blocker for cancer treatment
D. YANG, J. Li, T. Zhang…·J. Zhang
This paper identifies LXY18, a 4-phenoxy-quinoline compound that blocks AURKB relocalization, showing potent antimitotic activity and oral bioavailability.
DOI 10.1101/2023.01.29.526078 - MicrobiologybioRxivPreprint
Yersinia Type III-Secreted Effectors Evade the Caspase-4 Inflammasome in Human Cells
J. Zhang, I. E. Brodsky, S. Shin
This study shows Yersinia pseudotuberculosis effectors evade the caspase-4 inflammasome in human cells, unlike in mouse macrophages, by inhibiting Yersinia internalization.
DOI 10.1101/2023.01.24.525473 - MicrobiologybioRxivPreprint
Label-free quantitative proteomics analyses of mouse astrocytes provides insight into the host response mechanism at different developmental stages of Toxoplasma gondii
H. Xie, C. Xu, G. Zhao…·K. Yin
This study uses label-free proteomics to analyze mouse astrocytes infected with different stages of Toxoplasma gondii, identifying differentially expressed proteins that reveal host response mechanisms in acute and chronic infections.
DOI 10.1101/2023.01.15.524169 - BiochemistrybioRxivPreprint
Structure and activity of botulinum neurotoxin X
M. Martinez-Carranza, J. Skerlova, P.-G. Lee…·P. Stenmark
The paper presents the cryo-EM structure of BoNT/X-NTNH/X complex and shows its stability and low potency due to weak receptor-binding properties.
DOI 10.1101/2023.01.11.523524 - Plant BiologybioRxivPreprint
Wheat plant height locus RHT25 encodes a PLATZ transcription factor that interacts with DELLA (RHT1)
J. Zhang, C. Li, W. Zhang…·J. Dubcovsky
This paper identifies and characterizes the gene PLATZ-A1 underlying the GA-sensitive dwarfing locus RHT25 in wheat, showing it interacts with RHT1 and can modulate plant height.
DOI 10.1101/2023.01.05.522836 - Cancer BiologybioRxiv
StereoSiTE: A framework to spatially and quantitatively profile the cellular neighborhood organized iTME
X. Liu, C. Qu, C. Liu…·J. Zhang
StereoSiTE analyzes spatial transcriptomics data to identify cell-cell interactions in the tumor microenvironment and reveals neutrophil-driven communication networks in treated xenograft models.
DOI 10.1093/gigascience/giae078 - NeurosciencebioRxivPreprint
Distinct spatial patterns of neural and physiology-related activity in the human periaqueductal grey during anticipatory social stress.
Jordan E. Theriault, Alexandra K. Fischbach, Philip A. Kragel…·Ajay B. Satpute
The paper examines spatial patterns of PAG activity and physiological responses during social stress in humans using 7T imaging.