bioRxivGenomicsPreprint
Aging-associated changes in transcriptional elongation influence metazoan longevity.
Cédric Debès, Antonios PapadakisiD, Sebastian GrönkeiD, Özlem Karalay, Luke Stephen TainiD, Athanasia MiziiD, Shuhei NakamuraiD, Oliver HahniD, Carina Marianne WeigeltiD, Nataša JosipovićiD, Anne Zirkel, Isabell BrusiusiD, Konstantinos Sofiadis, Mantha LamprousiiD, Yuxuan LuiD, Wenming HuangiD, Reza EsmaillieiD, Torsten KubackiiD, Martin Richard SpäthiD, Bernhard SchermeriD, Thomas R. BenzingiD, Roman‐Ulrich MülleriD, Adam AntebiiD, Linda PartridgeiD, Argyris PapantonisiD, Andreas BeyeriD
Abstract
Physiological homeostasis becomes compromised during aging, as a result of impairment of cellular processes, including transcription and RNA splicing. However, the molecular mechanisms leading to the loss of transcriptional fidelity are so far elusive, as are ways of preventing it. Here, we profiled and analyzed genome-wide, aging-related changes in transcriptional processes across different organisms: nematode worms, fruit flies, mice, rats and humans. The average transcriptional elongation speed (Pol-II speed) increased with age in all five species. Along with these changes in elongation speed we observed changes in splicing, including a reduction of unspliced transcripts and the formation of more circular RNAs. Two lifespan-extending interventions, dietary restriction and lowered insulin/Igf signaling, both reversed most of these aging-related changes. Genetic variants in Pol-II that reduced its speed in worms and flies increased their lifespan. Similarly, reducing Pol-II speed by overexpressing histone components, to counter age-associated changes in nucleosome positioning, also extended lifespan in flies and the division potential of human cells. Our findings uncover fundamental molecular mechanisms underlying animal aging and lifespan-extending interventions, and point to possible preventative measures.
- organism: C. elegans
- organism: Drosophila
- organism: mouse
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: statistical model
- approach: experimental assay
- Citations
- 7
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Aging is associated with a systemic length-driven transcriptome imbalance
Thomas Stoeger, Rogan A. Grant, … Luı́s A. Nunes Amaral·Nature AgingPeer-reviewed·Dec 9, 2022
- Adulthood depletion of Integrator extends lifespan and healthspan via defective pre-mRNA processing
Luke Slade, Krzysztof Kuś, … Lidia Vasiljeva·bioRxiv·Apr 21, 2026
- Spurious intragenic transcription is a hallmark of mammalian cellular senescence and tissue aging
Payel Sen, Greg Donahue, … Shelley L. Berger·bioRxiv·May 20, 2022
- Transposable element landscape changes are buffered by RNA silencing in aging Drosophila
Nachen Yang, Satyam P. Srivastav, … Nelson C. Lau·bioRxiv·Jan 8, 2021
- Efficacy of longevity interventions in C. elegans is determined by early life activity of RNA splicing factors
Sneha Dutta, Caroline Heintz, … William B. Mair·bioRxiv·Nov 1, 2021
- Mammalian aging involves genome-wide splicing degeneration leading to functional decline
Sirui Zhang, Alexander Tyshkovskiy, … Vadim N. Gladyshev·bioRxiv·Jun 29, 2026