Author
J. Kim
Children's Hospital Los Angeles
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2016-2026 · peak 55/yrCo-Author Collaboration Network
10 top collaborators · 22 mutual co-author links232 papers
Recent·Most cited
- EcologybioRxivPreprintDOI 10.1101/2020.05.19.103507
- ImmunologybioRxivPreprint
Immunologic perturbations in severe COVID-19/SARS-CoV-2 infection
L. Kuri-Cervantes, M. B. Pampena, W. Meng…·M. R. Betts
The paper identifies broad immune perturbations in severe COVID-19, including innate and adaptive immune cell changes and heterogeneity in B cell responses and antibody production.
DOI 10.1101/2020.05.18.101717 - Cell BiologybioRxivPreprint
Skeletal muscle DNMT3A plays a necessary role in endurance exercise by regulating oxidative capacity of red muscles
S. Kang, S. Villivalam, D. You…·C. Adams
This study shows that DNMT3A in skeletal muscle regulates oxidative capacity and endurance exercise by controlling ROS production through ALDH1L1.
DOI 10.1101/2020.05.18.102400 - BiophysicsbioRxivPreprint
Structure-function properties in disordered condensates
K. Bhandari, M. A. Cotten, J. Kim…·J. D. Schmit
The paper studies client recruitment in biomolecular condensates using poly-SUMO and poly-SIM proteins, finding that filament structure influences functional client binding.
DOI 10.1101/2020.05.14.096388 - MicrobiologyPLOS PathogensPeer-reviewed
Zika virus infects pericytes in the choroid plexus and enters the central nervous system through the blood-cerebrospinal fluid barrier.
J. Kim, M. Hetman, E. M. Hattab…·D. Chung
This study identifies that Zika virus infects pericytes in the choroid plexus and crosses the blood-CSF barrier to enter the CNS, with CSF neutralization reducing brain infection.
DOI 10.1371/journal.ppat.1008204 - Plant BiologybioRxiv
VIL1, a Polycomb-associated protein, modulates high ambient temperature response via H3K27me3 and H2A.Z in Arabidopsis thaliana
DOI 10.1242/dev.201343 - BiochemistrybioRxiv
Cyclic pentapeptide cRGDfK enhances the inhibitory effect of sunitinib on TGF-β1-induced epithelial-to-mesenchymal transition in human non-small cell lung cancer cells
This study shows that combining sunitinib with cRGDfK enhances inhibition of TGF-β1-induced EMT in lung cancer cells by targeting Wnt and Smad pathways.
DOI 10.1371/journal.pone.0232917 - Cancer BiologybioRxiv
CCM 1 determines YAP/TAZ signaling dependent metastatic hallmarks of prostate cancer cells
J. Kim, S. Park, H.-Y. Lee…·E.-G. Kim
This study identifies CCM1 as a regulator of YAP/TAZ signaling that promotes prostate cancer metastasis and is inversely correlated with patient survival.
DOI 10.3390/cancers13051125 - Cell BiologybioRxiv
A Deep Learning Pipeline for Nucleus Segmentation
G. Zaki, P. R. Gudla, K. Lee…·G. Pegoraro
This paper develops a deep learning pipeline to evaluate nuclear segmentation models trained on small, custom annotated datasets, showing they can match or exceed performance of pre-trained models.
DOI 10.1002/cyto.a.24257 - Cancer BiologybioRxivPreprint
The hexosamine biosynthesis pathway is a targetable liability in lung cancers with concurrent KRAS and LKB1 mutations.
J. Kim, F. Cai, B. Ko…·R. J. DeBerardinis
The paper identifies the hexosamine biosynthesis pathway as a metabolic vulnerability in KRAS/LKB1 mutant lung cancers and shows GFPT2 inhibition reduces tumor growth.
- Cancer BiologybioRxivPreprint
Targeted Eicosanoid Profiling Reveals MicroRNA-155 Shifts PGE2/PGD2 Balance Towards Oncogenic State
S. Kim, E. S. Lee, E. J. Lee…·S. Chang
This study shows miR-155 shifts PGE2/PGD2 balance towards an oncogenic state by regulating enzymes involved in prostaglandin synthesis.
DOI 10.1101/2020.04.08.032136 - EcologybioRxiv
Development of a simple and accurate molecular tool for Spodoptera frugiperda species identification using LAMP
J. Kim, H. Y. Nam, M. Kwon…·D. Heckel
This paper develops a LAMP assay for rapid and accurate identification of Spodoptera frugiperda using a specific mtDNA region, showing high sensitivity and simplicity.
DOI 10.1002/ps.6350 - Cell BiologybioRxiv
Establishing cell-intrinsic limitations in cell cycle progression controls graft growth and promotes differentiation of pancreatic endocrine cells
L. Sui, D. M. Egli, Y. Xin…·R. Goland
The paper investigates how limitations in S-phase progression affect pancreatic endocrine differentiation and graft growth, finding that impaired DNA replication enhances differentiation and prevents cystic growth.
DOI 10.1172/jci.insight.141553 - Evolutionary BiologybioRxiv
Non-lethal exposure to H2O2 boosts bacterial survival and evolvability against oxidative stress
A. Rodriguez Rojas, J. Kim, P. R. Johnston…·J. Rolff
This study shows that non-lethal H2O2 exposure primes bacterial survival and accelerates evolution of resistance to oxidative stress.
DOI 10.1371/journal.pgen.1008649 - Cell BiologybioRxiv
Septin Roles and Mechanisms in Organization of Endothelial Cell Junctions
This study investigates the role of septin 2 in endothelial cell junction organization, showing its localization is critical for maintaining junctional integrity and that TNF-α disrupts this localization.
DOI 10.1161/atvbaha.120.315472 - MicrobiologybioRxiv
Telacebec for ultra-short treatment of Buruli ulcer in a mouse model
D. Almeida, P. J. Converse, T. F. Omansen…·E. Nuermberger
This study evaluates Telacebec's efficacy in shortening Buruli ulcer treatment in mice, showing it can cure infections in as little as 1 week with no relapse.
DOI 10.1128/aac.00259-20 - Evolutionary BiologybioRxiv
A Metric Space of Ranked Tree Shapes and Ranked Genealogies
J. Kim, N. A. Rosenberg, J. A. Palacios
The paper introduces a metric space for ranked genealogies to analyze evolutionary processes across multiple time periods and applies it to infectious disease studies.
DOI 10.1073/pnas.1922851117 - Scientific Communication & EducationbioRxivPreprint
Quantifying subclinical and longitudinal microvascular changes following episcleral plaque brachytherapy (EPB) using spectral-domain OCT angiography.
K. M. Green, B. C. Toy, B. S. Ashimatey…·A. H. Kashani
This study uses OCTA to detect microvascular changes after EPB, finding reduced capillary density and increased nonperfusion even without visible retinopathy.
- ImmunologybioRxiv
Chemokine receptors ACKR2 and CCR1 coordinate macrophage dynamics and mammary gland development
G. J. Wilson, A. Fukuoka, S. R. Love…·G. Graham
The paper shows ACKR2 and CCR1 regulate macrophage dynamics and mammary gland development by controlling CCL7 levels and macrophage movement.
DOI 10.1242/dev.187815 - Cell BiologybioRxiv
Transcription-replication conflicts as a source of common fragile site instability caused by BMI1-RNF2 deficiency
A. Sanchez, A. de Vivo, P. Tonzi…·Y. Kee
This study shows that BMI1 and RNF2 suppress transcription-replication conflicts and CFS instability by regulating RNA Pol II elongation and fork protection.
DOI 10.1371/journal.pgen.1008524 - BiophysicsbioRxiv
Magnetic-Alignment of Polymer Nanodiscs Probed by Solid-State NMR Spectroscopy
T. Ravula, J. Kim, D.-K. Lee, A. Ramamoorthy
This study investigates the magnetic alignment of SMA-QA polymer nanodiscs using solid-state NMR, showing their orientation changes in response to magnetic fields and paramagnetic salts.
DOI 10.1021/acs.langmuir.9b03538 - BioengineeringbioRxiv
A novel MRI-based finite element modeling method for calculation of myocardial ischemia effect in patients with functional mitral regurgitation.
Y. Zhang, V. Y. Wang, A. E. Morgan…·M. B. Ratcliffe
This paper introduces an MRI-based finite element modeling method to predict myocardial ischemia effects in patients with functional mitral regurgitation, showing successful convergence and agreement with experimental data.
- Cell BiologybioRxiv
Control of cytokinesis by β-adrenergic receptors indicates an approach for regulating cardiomyocyte endowment
H. Liu, C.-H. Zhang, N. Ammanamanchi…·B. Kuhn
This study shows that β-adrenergic receptor signaling regulates cardiomyocyte cytokinesis, and β-blockers like propranolol can enhance division in ToF/PS cardiomyocytes, potentially improving heart function in CHD patients.
DOI 10.1126/scitranslmed.aaw6419 - BioengineeringbioRxiv
High-throughput and all-solution phase African Swine Fever Virus (ASFV) detection using CRISPR-Cas12a and fluorescence based point-of-care system
This paper develops a CRISPR-Cas12a-based system for rapid, sensitive, and specific ASFV detection without nucleic acid amplification, achieving a detection limit of 100 fM.
DOI 10.1016/j.bios.2020.112068 - Evolutionary BiologybioRxiv
Assortative mating and the dynamical decoupling of genetic admixture levels from phenotypes that differ between source populations
J. Kim, M. D. Edge, A. Goldberg, N. A. Rosenberg
The paper develops a model showing how genetic admixture and phenotypes decouple over time, especially with assortative mating and few genetic loci influencing the trait.
DOI 10.1002/ajpa.24261 - Cancer BiologybioRxiv
Stromal Hedgehog pathway activation by IHH suppresses lung adenocarcinoma growth and metastasis by limiting reactive oxygen species
S. Kasiri, B. Chen, A. N. Wilson…·J. Kim
This study shows that IHH activates the stromal Hedgehog pathway to suppress lung adenocarcinoma growth and metastasis by reducing reactive oxygen species.
DOI 10.1038/s41388-020-1224-5 - BioengineeringNature MethodsPeer-reviewed
Oblique plane single-molecule localization microscopy for thick samples
J. Kim, M. Wojcik, Y. Wang…·X. Zhang
This paper introduces obSTORM, a method for super-resolution imaging of thick samples, achieving isotropic resolution over significant depths.
DOI 10.1038/s41592-019-0510-z - Evolutionary BiologybioRxiv
Designing gene drives to limit spillover to non-target populations
G. Greenbaum, M. W. Feldman, N. A. Rosenberg, J. Kim
This study uses mathematical models to show that differential-targeting gene drives can limit spillover to non-target populations, but only under specific parameter configurations and low migration rates.
DOI 10.1371/journal.pgen.1009278 - MicrobiologybioRxiv
Novel quinolone resistance determinant, qepA8, in Shigella flexneri isolated in the United States, 2016
H. E. Webb, K. A. Tagg, J. C. Chen…·J. P. Folster
The paper identifies a novel qepA8 variant in Shigella flexneri associated with reduced ciprofloxacin susceptibility.
DOI 10.1128/aac.01458-19