Author
S. Cheng
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2018-2025 · peak 16/yrCo-Author Collaboration Network
10 top collaborators · 17 mutual co-author links59 papers
Recent·Most cited
- Cancer BiologybioRxiv
Ribosomal protein L23 drives the metastasis of hepatocellular carcinoma via upregulating MMP9
J. Chen, F. Li, M. Yang…·Y. Chen
This study identifies ribosomal protein L23 as a driver of hepatocellular carcinoma metastasis by upregulating MMP9 expression and promoting tumor growth and metastasis in vivo.
DOI 10.3389/fonc.2021.779748 - Cell BiologybioRxiv
Tau assemblies enter the cytosol in a cholesterol sensitive process essential to seeded aggregation
B. J. Tuck, L. V. C. Miller, E. L. Wilson…·W. A. McEwan
The paper investigates how tau assemblies enter the cytosol, finding that cholesterol levels and specific cellular machinery are critical for this process, which is essential for seeded aggregation.
DOI 10.1016/j.celrep.2022.110776 - BiochemistrybioRxiv
Standardized workflow for precise mid- and high-throughput proteomics of blood biofluids
A. Mc Ardle, , A. Binek, A. Moradian…·J. E. VanEyk
The paper develops a standardized proteomics workflow for high- and mid-throughput analysis of blood biofluids, showing reliable protein detection across different matrices.
DOI 10.1093/clinchem/hvab202 - BiochemistrybioRxiv
Cation and anion channelrhodopsins: Sequence motifs and taxonomic distribution
E. G. Govorunova, O. A. Sineshchekov, H. Li…·J. L. Spudich
The paper identifies and characterizes sequence motifs and ion selectivity mechanisms in channelrhodopsins from diverse algal and protist species using electrophysiological analysis and genomic data.
DOI 10.1128/mbio.01656-21 - Cell BiologyCurrent BiologyPeer-reviewed
Nuclear deformation causes DNA damage by increasing replication stress
P. Shah, C. M. Hobson, S. Cheng…·J. Lammerding
The paper shows that nuclear deformation during migration or compression causes DNA damage by increasing replication stress, primarily in S/G2 phase, independent of nuclear envelope rupture.
DOI 10.1016/j.cub.2020.11.037 - Cancer BiologybioRxiv
A cross-species drug discovery pipeline to identify and validate new treatments for osteosarcoma
J. Somarelli, G. Rupprecht, E. Altunel…·D. Hsu
This study develops a cross-species drug discovery pipeline to identify and validate new treatments for osteosarcoma, finding that dual inhibition of proteasome and CRM1 pathways induces synergistic cytotoxicity.
DOI 10.3390/cancers12113335 - MicrobiologybioRxivPreprint
Identification of a peroxidase inhibitor that enhances kanamycin activity
Z. Hui, S. Liu, R. Cui…·W. Huang
The paper identifies a peroxidase inhibitor, 6D1, that enhances kanamycin activity against carbapenem-resistant bacteria.
DOI 10.1101/2020.10.12.336933 - BiochemistrybioRxiv
Nature-inspired Circular-economy Recycling (NaCRe) for Proteins: Proof of Concept
S. Giaveri, A. M. Schmitt, L. Roset Julia…·F. Stellacci
This study demonstrates a method to recycle proteins into new functional proteins using a cell-free system, aligning with circular-economy principles.
DOI 10.1002/adma.202104581 - MicrobiologybioRxivPreprint
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity
C. Martino, B. P. Kellman, D. R. Sandoval…·R. Knight
This study shows that commensal bacteria modify heparan sulfate, reducing SARS-CoV-2 spike protein binding and that this bacterial presence decreases with age, increasing COVID-19 susceptibility.
DOI 10.1101/2020.08.17.238444 - PathologybioRxiv
Identification of microbial markers across populations in early detection of colorectal cancer
Y. Wu, N. Jiao, R. Zhu…·L. Zhu
The paper identifies microbial markers for early colorectal cancer detection across populations using meta-analysis and classifier models, achieving high diagnostic accuracy.
DOI 10.1038/s41467-021-23265-y - PathologybioRxiv
Human Cytomegalovirus Drives WDR5 to the Virion Assembly Compartment to Facilitate Virion Assembly
M.-H. Luo, B. Yang, Y. Yao…·S. Gong
This paper shows HCMV drives WDR5 to the virion assembly compartment to facilitate virion assembly, expanding its role beyond nuclear egress.
DOI 10.1128/jvi.02101-20 - BioengineeringbioRxiv
Single-cell cytometry via multiplexed fluorescence prediction by label-free reflectance microscopy
S. Cheng, S. Fu, Y. M. Kim…·L. Tian
This paper introduces a label-free imaging cytometry method using deep learning to predict subcellular features from reflectance microscopy, achieving higher accuracy and throughput for single-cell analysis.
DOI 10.1126/sciadv.abe0431 - Cancer BiologybioRxiv
Loss of HOXB13 expression in neuroendocrine prostate cancer
S. Cheng, S. Yang, Y. Shi…·X. Yu
The paper shows HOXB13 expression is reduced or lost in neuroendocrine prostate cancer (NEPCa) and that NEPCa tumors lose prostate-specific HOX codes without gaining a clear new tissue identity.
DOI 10.1038/s41598-021-82472-1 - Cancer BiologybioRxiv
Loss of hepatic aldolase B activates Akt and promotes hepatocellular carcinogenesis by destabilizing Aldob/Akt/PP2A protein complex
This study shows that loss of Aldob activates Akt, promoting hepatocellular carcinoma by destabilizing the Aldob/Akt/PP2A complex, and identifies SMAP as a potential therapeutic agent.
DOI 10.1371/journal.pbio.3000803 - BioengineeringbioRxiv
Electronic blood vessel
S. Cheng, C. Hang, L. Ding…·X. Jiang
This paper develops an electronic blood vessel using flexible bio-degradable circuitry to enhance endothelization and enable gene delivery, showing good biocompatibility and patency in a rabbit model.
DOI 10.1016/j.matt.2020.08.029 - Cancer BiologybioRxiv
Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
S. Takao, L. Forbes, M. Uni…·A. Kentsis
This study identifies aberrant MYB complex assembly as a driver of oncogenic gene expression in AML and shows that targeting this complex can induce differentiation and apoptosis.
DOI 10.7554/elife.65905 - Animal Behavior & CognitionbioRxiv
Emergence of complex dynamics of choice due to repeated exposures to extinction learning
J. R. Donoso, J. Packheiser, R. Pusch…·S. Cheng
This study examines how repeated extinction learning sessions affect behavior in pigeons, revealing session-specific variability and a decay in renewal effects over time.
DOI 10.1007/s10071-021-01521-4 - BiochemistrybioRxiv
mTOR-driven widespread exon skipping renders multifaceted gene regulation and proteome complexity
S. Cheng, N. A. Fahmi, M. Park…·J. Yong
This study shows that mTOR hyperactivation causes widespread exon skipping, leading to diverse proteomic changes through alternative splicing in both 5’-UTR and coding regions.
DOI 10.3390/ijms232012416 - Cancer BiologybioRxiv
The expression of YAP1 is increased in high-grade prostatic adenocarcinoma but is reduced in neuroendocrine prostate cancer
S. Cheng, N. Prieto-Dominguez, S. Yang…·X. Yu
This study shows YAP1 is increased in high-grade prostate adenocarcinoma but reduced in neuroendocrine prostate cancer, with YAP1 loss activating Wnt/beta-Catenin signaling linked to NEPC development.
DOI 10.1038/s41391-020-0229-z - ImmunologybioRxiv
Long noncoding RNA AVAN promotes antiviral innate immunity by interacting with TRIM25 and enhancing the transcription of FOXO3a
C. Lai, l. liu, q. liu…·X. Wang
This study identifies lncRNA AVAN as a positive regulator of antiviral innate immunity by interacting with TRIM25 and enhancing FOXO3a transcription.
DOI 10.1038/s41418-021-00791-2 - Plant BiologybioRxiv
An ancestral signalling pathway is conserved in plant lineages forming intracellular symbioses
G. V. Radhakrishnan, J. Keller, M. K. Rich…·P.-M. Delaux
The paper shows that an ancestral signaling pathway is conserved in plant lineages with intracellular symbioses but lost in those with extracellular symbioses.
DOI 10.1038/s41477-020-0613-7 - Cancer BiologyAnnals of OncologyPeer-reviewed
Frequency of mutations in 21 hereditary breast and ovarian cancer susceptibility genes among high-risk Chinese individuals
D. Shao, S. Cheng, F. Guo…·M. Ye
The paper assesses the frequency of deleterious mutations in 21 hereditary breast and ovarian cancer genes among 882 high-risk Chinese individuals, finding 19.5% carried such mutations, with higher rates in those with both breast and ovarian cancer histories.
DOI 10.1093/annonc/mdz250.018 - BioengineeringbioRxiv
Deep spectral learning for label-free optical imaging oximetry with uncertainty quantification
R. Liu, S. Cheng, L. Tian, J. Yi
This paper introduces a deep learning method for label-free optical oximetry that provides uncertainty quantification and demonstrates improved accuracy over traditional methods in rat retinal imaging.
- Cancer BiologybioRxiv
Low-dose IFN-γ induces tumor cell stemness in tumor microenvironment of non-small cell lung cancer
Y. Zhang, M. Song, Y. Ping…·L. Wang
This study shows low-dose IFN-γ promotes tumor stemness in NSCLC via ICAM1-PI3K-Akt-Notch1 pathway, while high-dose IFN-γ induces apoptosis through JAK1-STAT1-caspase pathway.
DOI 10.1158/0008-5472.can-19-0596 - Cancer BiologybioRxiv
From the clinic to the bench and back again in one dog year: identifying new treatments for sarcoma using a cross-species personalized medicine pipeline
S. Rao, J. A. Somarelli, E. Altunel…·W. C. Eward
This paper develops a cross-species personalized medicine pipeline using canine sarcomas to identify new treatments, finding proteasome inhibitors initially effective but limited by tumor heterogeneity.
DOI 10.3389/fonc.2020.00117 - BiochemistrybioRxiv
A new family of neural wiring receptors across bilaterians defined by phylogenetic, biochemical and structural evidence
S. Cheng, Y. Park, J. D. Kurleto…·E. Özkan
The paper identifies Dprs and DIPs as part of an ancient bilaterian receptor family involved in neural wiring, supported by phylogenetic, biochemical, and structural evidence.
DOI 10.1073/pnas.1818631116 - Cancer BiologybioRxivPreprint
Cellular senescence is a central response to cytotoxic chemotherapy in high-grade serous ovarian cancer
L. Calvo, S. Cheng, M. Skulimowski…·F. Rodier
The paper shows that chemotherapy induces cellular senescence in high-grade serous ovarian cancer, which correlates with better patient survival.
DOI 10.1101/425199 - Plant BiologybioRxiv
Sensing Plant Physiology and Environmental Stress by Automatically Tracking Fj and Fi Features in PSII Chlorophyll Fluorescence Induction
Q. Xia, J. Tan, S. Cheng…·Y. Guo
This paper develops a method to consistently measure Fj and Fi in PSII chlorophyll fluorescence induction by tracking curvature, improving accuracy under varying conditions.
DOI 10.1111/php.13141