Author
S. Yang
Seoul National University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2026 · peak 44/yrCo-Author Collaboration Network
10 top collaborators · 44 mutual co-author links162 papers
Recent·Most cited
- MicrobiologybioRxivPreprint
The circulating phageome reflects bacterial infections
N. L. Haddock, L. J. Barkal, N. Ram-Mohan…·P. Bollyky
The paper shows that circulating phageome in cfDNA reflects bacterial infections and can distinguish between pathogenic and contaminant bacteria.
DOI 10.1101/2022.08.15.504009 - ImmunologybioRxiv
Rational identification of potent and broad sarbecovirus-neutralizing antibody cocktails from SARS convalescents
Y. R. Cao, F. Jian, Z. Zhang…·X. S. Xie
The paper identifies a potent and broad sarbecovirus-neutralizing antibody cocktail, SA55+SA58, from SARS convalescents to combat Omicron variants and other fast-evolving viruses.
DOI 10.1016/j.celrep.2022.111845 - Cell BiologybioRxiv
Csf1 from marrow adipogenic precursors is required for osteoclast formation and hematopoiesis in bone
DOI 10.7554/elife.82112 - ImmunologybioRxiv
Characterizations of enhanced infectivity and antibody evasion of Omicron BA.2.75
Y. Cao, W. Song, L. Wang…·X. Wang
This study characterizes the enhanced infectivity and antibody evasion properties of the SARS-CoV-2 Omicron subvariant BA.2.75 compared to BA.5 and other variants.
DOI 10.1016/j.chom.2022.09.018 - Cancer BiologybioRxivPreprint
Noninvasive cancer detection by extracting and integrating multi-modal data from whole-methylome sequencing of plasma cell-free DNA
F. Bie, Z. Wang, Y. Li…·S. Gao
This paper develops a method to detect cancer noninvasively by integrating methylation, fragmentation, and copy number data from plasma cell-free DNA using machine learning.
DOI 10.1101/2022.07.04.498641 - Cell BiologybioRxiv
Single-Cell RNA-seq of Heart Reveals Intercellular Communication Drivers of Myocardial Fibrosis in Diabetic Mice
Z. Zhang, W. Li, X. Lou…·S. Qiao
This study uses single-cell RNA-seq to identify intercellular communication drivers of myocardial fibrosis in diabetic mice, highlighting key ligand-receptor interactions and fibroblast subpopulations involved in fibrosis.
- BiophysicsbioRxiv
Membrane curvature governs the distribution of Piezo1 in live cells
S. Yang, X. Miao, S. Arnold…·Z. Shi
This study shows membrane curvature regulates Piezo1 distribution in live cells, with Piezo1 depletion from curved protrusions and enrichment in invaginations, and activation reduces filopodia formation.
- MicrobiologybioRxiv
Anaerobic methane oxidizing archaea offset sediment methane concentrations in Arctic thermokarst lagoons
S. Yang, S. E. Anthony, M. Jenrich…·S. Liebner
The paper examines methane cycling in Arctic thermokarst lagoons and finds that sulfate-driven anaerobic methane oxidation reduces sediment methane concentrations.
DOI 10.1111/gcb.16649 - MicrobiologybioRxivPreprint
Multiple ParA/MinD ATPases coordinate the positioning of disparate cargos in a bacterial cell
L. T. Pulianmackal, J. M. I. Limcaoco, K. Ravi…·A. G. Vecchiarelli
This study identifies multiple ParA/MinD ATPases in bacteria that coordinate the positioning of diverse cellular cargos, revealing specificity determinants and indirect regulatory interactions.
DOI 10.1101/2022.06.09.495121 - BioengineeringbioRxivPreprint
Topical Delivery of Elastic Liposomal Vesicles for Treatment of Middle and Inner Ear Disease
R. K. Sadabad, A. Xia, N. Benkafadar…·T. Valdez
This study demonstrates that transfersomes (TLipo) can deliver drugs topically to the middle and inner ear without damaging the tympanic membrane, showing safety and efficacy in vitro and in vivo.
DOI 10.1101/2022.06.02.494551 - BiochemistrybioRxivPreprint
Arf GTPase activates the WAVE Regulatory Complex through a novel binding site
S. Yang, Y. Liu, A. Brown…·B. Chen
This study identifies a novel Arf1 binding site on WRC that drives activation through a mechanism distinct from Rac1.
DOI 10.1101/2022.05.13.491857 - BiochemistrybioRxiv
Structures reveal a key mechanism of WAVE Regulatory Complex activation by Rac1 GTPase
B. Ding, S. Yang, M. Schaks…·B. Chen
The paper reports WAVE Regulatory Complex structures bound to Rac1, revealing how Rac1 binding at the A site activates WRC to drive actin polymerization.
DOI 10.1038/s41467-022-33174-3 - BiophysicsbioRxiv
Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack
S. Yang, G. Hiotis, Y. Wang…·T. Walz
The paper investigates HIV-1 spike protein dynamics using cryo-EM and simulations, showing how tilting exposes the MPER to antibody attack and alters membrane fusion.
- ImmunologybioRxiv
BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection
Y. R. Cao, A. Yisimayi, F. Jian…·X. S. Xie
This study investigates antibody evasion by SARS-CoV-2 Omicron sublineages BA.2.12.1, BA.4, and BA.5 against plasma from vaccination and BA.1 infection, showing increased neutralization escape.
DOI 10.1038/s41586-022-04980-y - ImmunologybioRxiv
Disease diagnostics using machine learning of immune receptors
M. E. Zaslavsky, E. Craig, J. K. Michuda…·S. D. Boyd
The paper develops Mal-ID, a machine learning framework using immune receptor data to diagnose diseases, detecting infections, autoimmune disorders, and vaccine responses.
- ImmunologybioRxivPreprint
Peptidoglycan recognition protein S2 is crucial for activation the Toll pathway against Israeli acute paralysis virus infection in honey bee Apis mellifera
Y. Deng, S. Yang, H. Zhao…·c. hou
This study identifies the Toll pathway as a key antiviral defense in honey bees, with PGRP-S2 acting as a pattern recognition receptor that interacts with viral proteins to activate the pathway against IAPV infection.
- MicrobiologybioRxiv
Comparative miRNA Transcriptomics of Mouse and Macaque Reveals MYOC is An Inhibitor for C. neoformans Invasion into Brain
DOI 10.1080/22221751.2022.2081619 - BiochemistrybioRxiv
Substrate Binding and Inhibition of the Anion Exchanger 1 Transporter
M. J. Capper, S. Yang, A. C. Stone…·D. Wacker
The paper presents high-resolution cryo-EM structures of the full-length human AE1 transporter in various states, revealing substrate binding, inhibition mechanisms, and lipid/sterol binding sites.
- ImmunologybioRxivPreprint
Omicron BA.2 specifically evades broad sarbecovirus neutralizing antibodies
Y. Cao, A. Yisimayi, F. Jian…·X. S. Xie
This study shows that BA.2 causes stronger antibody evasion than BA.1, particularly in SARS convalescents, and identifies key mutations responsible for this escape.
DOI 10.1101/2022.02.07.479349 - Cell BiologybioRxivPreprint
Transcription factor FOXM1 specifies the loading of chromatin DNA to extracellular vesicles
Y. Zhang, N. Ding, Y. Li…·Y. Tan
This study identifies FOXM1 as a transcription factor that specifies and loads chromatin DNA fragments into extracellular vesicles via an LC3-dependent autophagosome-MVB pathway.
DOI 10.1101/2022.01.27.477315 - ImmunologybioRxiv
Omicron escapes the majority of existing SARS-CoV-2 neutralizing antibodies
Y. R. Cao, J. Wang, F. Jian…·X. S. Xie
This study identifies how Omicron evades neutralizing antibodies by analyzing mutations and their effects on different epitope groups, showing over 85% of tested antibodies are escaped.
DOI 10.1038/s41586-021-04385-3 - Animal Behavior & CognitionbioRxivPreprint
Trajectory Recording and Analysis System for Cockroach Robot
This paper describes a system for recording and analyzing the movement trajectories of a cockroach robot after stimulation.
DOI 10.1101/2021.11.16.468890 - Cell BiologybioRxivPreprint
Optogenetic manipulation of cGMP highlights PDE5 as the predominant cGMP-hydrolyzing PDE in megakaryocytes
Y. Zhang, P. Benz, D. Stehle…·M. Bender
The paper uses optogenetics to manipulate cGMP levels in megakaryocytes and identifies PDE5 as the main enzyme regulating cGMP.
DOI 10.1101/2021.11.12.468375 - BiochemistrybioRxiv
Nucleobase clustering contributes to the formation and hollowing of repeat-expansion RNA condensate
Y. Ma, H. Li, Z. Gong…·C. Tang
This study shows that nucleobase clustering in RNA with repeat expansions leads to the formation and hollowing of RNA condensates, contributing to neurodegenerative disease mechanisms.
DOI 10.1021/jacs.1c12085 - ImmunologybioRxiv
Intracellular pH links energy metabolism to lymphocyte death and proliferation
The paper shows that intracellular pH (pHi) regulates lymphocyte survival and apoptosis through energy metabolism, with low pHi inducing apoptosis and high pHi promoting survival.
DOI 10.1038/s41598-025-16862-0 - MicrobiologybioRxivPreprint
MRGM: a mouse reference gut microbiome reveals a large functional discrepancy for gut bacteria of the same genus between mice and humans
N. Kim, C. Y. Kim, S. Yang…·I. Lee
The paper constructs a mouse reference gut microbiome (MRGM) and finds significant functional discrepancies between mouse and human gut bacteria of the same genus.
DOI 10.1101/2021.10.24.465599 - Evolutionary BiologybioRxivPreprint
Diverse northern Asian and Jomon-related genetic structure discovered among socially complex Three Kingdoms period Gaya region Koreans
P. Gelabert, A. Blazyte, Y. Chang…·R. Pinhasi
The study reports the first ancient Korean genomes from the Three Kingdoms period, revealing genetic diversity linked to northern Chinese and Japanese Jomon-related ancestry.
DOI 10.1101/2021.10.23.465563 - Cancer BiologybioRxivPreprint
Spatially-resolved transcriptomics analyses of invasive fronts in solid tumors
L. Wu, J. Yan, Y. Bai…·J. Zhou
This study uses spatial transcriptomics to analyze invasive fronts in solid tumors, identifying immune cell enrichment, metabolic changes, and poor prognosis factors.
DOI 10.1101/2021.10.21.465135