Author
Y. Zhao
Hospital for Sick Children
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2017-2026 · peak 70/yrCo-Author Collaboration Network
10 top collaborators · 41 mutual co-author links302 papers
Recent·Most cited
- DOI 10.3389/fphys.2023.1267804
- BiochemistryACS Chemical BiologyPeer-reviewed
Docking Domain Engineering in a Modular Polyketide Synthase and its Impact on Structure and Function
L. Buyachuihan, Y. Zhao, C. S. Schelhas, M. Grininger
This study engineers docking domains in modular PKSs to couple polypeptides, showing that high-affinity interactions can improve synthesis but may reduce rates, with efficiency recovery through hinge regions.
DOI 10.1021/acschembio.3c00074 - BioengineeringbioRxivPreprint
Spatiotemporal Control of Genomics and Epigenomics by Ultrasound
Y. Wu, Z. Huang, Y. Liu…·Y. Wang
This paper develops FUS-CRISPR(a/i) tools to remotely control gene expression and epigenetic modifications in vivo, showing therapeutic effects in tumor models.
DOI 10.1101/2023.06.21.544125 - Plant BiologybioRxiv
Dynamic phytomeric growth contributes to local adaptation in barley
Y. Huang, A. Maurer, R. F. H. Giehl…·T. Schnurbusch
This study shows that domestication in barley extends the apical meristematic phase for node initiation but restricts internode elongation, with genetic factors influencing these processes along latitudinal and longitudinal gradients.
DOI 10.1093/molbev/msae011 - BiochemistrybioRxiv
Structure and activation of the human autophagy-initiating ULK1C:PI3KC3-C1 supercomplex
M. Chen, T. N. Nguyen, X. Ren…·J. H. Hurley
The paper determines the cryo-EM structure of the human ULK1C core and its complex with PI3KC3-C1, revealing structural changes that suggest a mechanism for autophagy initiation through supercomplex formation.
- BiophysicsbioRxiv
Nde1 Promotes Lis1-Mediated Activation of Dynein
This study investigates how Nde1 and Lis1 regulate dynein complex assembly and motility using in vitro reconstitution and single molecule imaging, revealing two distinct roles for Nde1 in promoting dynein activation.
DOI 10.1038/s41467-023-42907-x - Plant BiologybioRxivPreprint
Exploration of an enzyme-product mapping approach for plant-derived diterpene synthases
Y. Zhao, Y. Liang, X. Han, M. Wen
The paper analyzes the relationship between diterpene synthase sequences, structures, and their products to identify functional residues that influence product specificity.
DOI 10.1101/2023.05.26.542545 - BiophysicsbioRxiv
EXTRACELLULAR PERINEXAL SEPARATION IS A PRINCIPAL DETERMINANT OF CARDIAC CONDUCTION
W. P. Adams, T. B. Raisch, Y. Zhao…·S. Poelzing
This study investigates the relationship between cardiac conduction velocity and extracellular space structure, finding a biphasic relationship with perinexal separation, supporting ephaptic coupling over gap junction-based conduction.
DOI 10.1161/circresaha.123.322567 - Plant BiologybioRxivPreprint
Establishment of hairy root culture and its genetic transformation of Stephania tetrandra S. Moore for production of BIAs
X. Zhang, J. Bu, Y. Zhao…·L. Huang
This paper establishes a hairy root culture and genetic transformation system in Stephania tetrandra to enhance bisbenzylisoquinoline alkaloid production.
DOI 10.1101/2023.05.17.541101 - ImmunologybioRxiv
Early cellular and molecular signatures correlate with severity of West Nile Virus infection
H.-J. Lee, Y. Zhao, I. Fleming…·R. R. Montgomery
The paper identifies cellular and molecular signatures associated with varying severities of West Nile Virus infection using multi-omics analysis of immune responses.
DOI 10.1016/j.isci.2023.108387 - Cancer BiologybioRxivPreprint
Integrated Epigenetic and Transcriptomic Profiling Reveals Dynamic Regulatory Networks Driving Retinoblastoma Pathogenesis
Y. Zhao, P. Liu, L. Hu…·Z. Zeng
This study uses single-cell multi-omics to map epigenetic and transcriptomic changes in retinoblastoma, identifying key regulators and potential drug targets.
- Evolutionary BiologybioRxiv
Evolution of High-Molecular-Mass Hyaluronic Acid is Associated with Subterranean Lifestyle
Y. Zhao, Z. Zheng, Z. Zhang…·V. Gorbunova
The paper identifies that subterranean mammals have abundant high-molecular-mass HA due to genetic changes, which may aid in cancer resistance and adaptation to hypoxic environments.
DOI 10.1038/s41467-023-43623-2 - Cancer BiologybioRxivPreprint
DNA repair and anti-cancer mechanisms in the longest-living mammal: the bowhead whale
D. Firsanov, M. Zacher, X. Tian…·Gladyshev
This study investigates DNA repair mechanisms in bowhead whales, showing their high efficiency and accuracy in repairing DNA damage, which may explain their long lifespan without cancer.
DOI 10.1101/2023.05.07.539748 - BiophysicsbioRxivPreprint
Shin in the eye: Au-CS@FNDs as contact lens additives for blocking UV irradiation, bacterial keratitis, and corneal neovascularizationtherapies
This paper develops Au-CS@FNDs contact lens additives to block UV, prevent bacterial keratitis, and inhibit corneal neovascularization.
DOI 10.1101/2023.04.11.536356 - Cell BiologybioRxiv
Sox11 is enriched in myogenic progenitors but dispensable for development and regeneration of skeletal muscle.
S. N. Oprescu, N. Baumann, X. Chen…·S. Kuang
This study identifies Sox11 as a marker of differentiating muscle satellite cells, showing reduced expression in quiescent and aged cells, but finds it dispensable for muscle development and regeneration.
- PathologybioRxiv
APOL1 kidney risk variants in glomerular diseases modeled in transgenic mice
T. Yoshida, K. Z. Latt, B. A. Santo…·J. B. Kopp
This paper uses two transgenic mouse models to study APOL1 risk variants' effects on glomerular disease, identifying shared and distinct transcriptional changes in podocytes.
DOI 10.1681/asn.0000000000000370 - Plant BiologybioRxivPreprint
Artificially cultivated duckweed: a high-efficiency starch producer
Y. Fang, L. Guo, S. Wang…·H. Zhao
This paper reports a method to produce starch efficiently from duckweed under specific conditions and identifies mechanisms behind its high starch accumulation.
DOI 10.1101/2023.03.23.533730 - Evolutionary BiologybioRxiv
Duckweed evolution: from land back to water
Y. Fang, X. Tian, Y. Jin…·H. Zhao
This study investigates the reverse evolution of duckweed from land back to water, showing gradual degeneration in root structure, stomatal function, and lignocellulose content, along with gene pathway changes.
DOI 10.1093/gpbjnl/qzaf074 - Cancer BiologybioRxivPreprint
Plasma cells in human pancreatic ductal adenocarcinoma secrete antibodies to self-antigens
M. Yao, J. Preall, J. Yeh…·D. Fearon
The paper identifies auto-antibodies secreted by plasma cells in PDAC against self-antigens, suggesting a link between chronic inflammation and autoimmunity.
- Plant BiologybioRxivPreprint
Widespread readthrough events in plants reveal unprecedented plasticity of stop codons
Y. Zhang, H. Li, Y. Shen…·L. Wu
The paper identifies widespread stop codon readthrough events in plants and reveals the plasticity of stop codons in encoding amino acids.
DOI 10.1101/2023.03.20.533458 - Cell BiologybioRxivPreprint
LIFR recruits HGF-producing neutrophils to promote liver injury repair and regeneration
Y. Deng, Z. Zhao, M. Sheldon…·L. Ma
This study shows that LIFR in hepatocytes regulates neutrophil recruitment and activity to promote liver regeneration through CXCL1-CXCR2 and cholesterol-HGF pathways.
DOI 10.1101/2023.03.18.533289 - Plant BiologybioRxivPreprint
The maize PLASTID TERMINAL OXIDASE (PTOX) gene controls the carotenoid content of kernels.
Y. Nie, H. Wang, G. Zhang…·Z. Zhang
This study identifies ZmPTOX1 as a key gene for carotenoid biosynthesis in maize kernels, showing that its disruption reduces carotenoid content while overexpression increases it, particularly beta-carotene.
DOI 10.1101/2023.03.13.532334 - BiophysicsbioRxiv
Structural insights into the allosteric inhibition of P2X4 receptors
C. Shen, W. Cui, Y. Zhang…·M. Hattori
This study reports cryo-EM structures of zebrafish P2X4 receptors bound to antagonists, revealing ligand-dependent structural changes that explain subtype-specific allosteric inhibition.
- Cell BiologybioRxivPreprint
A proximity-dependent biotinylation map of cytosol-facing organelle outer membrane proteome in living Arabidopsis cells
X. Bao, H. Jia, X. Zhang…·X. Zhu
The paper develops an OM proximity labeling system to map the proteome of cytosol-facing outer membranes in Arabidopsis cells and identifies potential receptors for protein translocation and organelle communication.
DOI 10.1101/2023.03.03.531038 - ImmunologybioRxivPreprint
Excessive apoptosis of naïve T cells resulting hyperactivation as a cause of mammalian aging
L. Wang, X. Zhang, H. Zhang…·B. Zhou
This study shows that excessive apoptosis in naïve T cells causes hyperactivation and accelerates aging in mice, suggesting T-cell changes are a cause of aging.
DOI 10.1101/2023.02.24.529806 - BioengineeringbioRxivPreprint
High-throughput screening of functional neo-antigens and their specific TCRs via the Jurkat reporter system combine with droplet microfluidics
The paper develops a high-throughput platform for screening functional neo-antigens and their specific TCRs using droplet microfluidics and DNA barcoding.
DOI 10.1101/2023.02.20.529171 - PhysiologybioRxiv
E2F1 Mediates SOX17 Deficiency-Induced Pulmonary Hypertension
D. Yi, B. Liu, H. Ding…·Z. Dai
This study shows that SOX17 deficiency in endothelial cells causes pulmonary hypertension via E2F1 signaling, suggesting E2F1 as a therapeutic target in PAH.
DOI 10.1161/hypertensionaha.123.21241 - PhysiologybioRxivPreprint
An Unexpected Role of Neutrophils in Clearing Apoptotic Hepatocytes In Vivo
This study reveals that neutrophils, not macrophages, primarily clear apoptotic hepatocytes through a novel process called perforocytosis, and defects in this process contribute to autoimmune liver disease.
DOI 10.1101/2023.02.08.527616