Author
P. Zhang
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2017-2026 · peak 33/yrCo-Author Collaboration Network
10 top collaborators · 22 mutual co-author links149 papers
Recent·Most cited
- MicrobiologybioRxivPreprint
CryoET structures of immature HIV Gag reveal a complete six-helix bundle and stabilizing small molecules distinct from IP6
L. Mendonca, D. Sun, J. Ning…·P. Zhang
The paper determines the structure of the HIV Gag six-helix bundle using cryoET and identifies small molecules stabilizing the immature lattice.
- ImmunologybioRxiv
Prime-boost vaccination of mice and Rhesus macaques with two novel adenovirus vectored COVID-19 vaccine candidates
S. Luo, P. Zhang, B. Li…·C. Li
This study evaluates two adenovirus vectored COVID-19 vaccines in mice and macaques, showing strong immune responses after prime-boost vaccination.
- BioengineeringbioRxiv
Untargeted LC-MS metabolomics for the analysis of micro-scaled extracellular metabolites from hepatocytes
R. Abdalkader, R. Chaleckis, I. Meister…·K.-i. Kamei
The paper develops an LC-MS-based untargeted metabolomics protocol to analyze micro-scale extracellular metabolites from hepatocytes and identifies metabolite shifts over time.
DOI 10.2116/analsci.20n032 - Plant BiologybioRxivPreprint
Reappraisal of Spinach-based RNA Visualization in Plants
Z. A. Yu, F. Mei, H. Yan…·Y. Hong
This study reevaluates Spinach-based RNA visualization in plants, showing potential for ex vivo and in vivo RNA monitoring.
DOI 10.1101/2020.09.24.310607 - MicrobiologybioRxiv
Diversity and dynamics of fungi during spontaneous fermentations and association with unique aroma profiles in wine
D. Liu, J.-L. Legras, P. Zhang…·K. Howell
The paper investigates fungal and yeast communities in spontaneous wine fermentations, finding geographic differentiation and S. cerevisiae's role in shaping wine aroma profiles.
DOI 10.1016/j.ijfoodmicro.2020.108983 - ImmunologybioRxiv
Human T-bet governs innate and innate-like adaptive IFN-γ immunity against mycobacteria
R. Yang, F. Mele, L. Worley…·L. H Glimcher
This study identifies T-bet deficiency as a cause of mycobacterial disease by impairing IFN-γ production in innate and innate-like adaptive lymphocytes.
DOI 10.1016/j.cell.2020.10.046 - EcologybioRxiv
Belowground plant-plant signaling of root infection by nematodes
P. Zhang, D. Bonte, G. De Deyn, M. L. Vandegehuchte
The paper investigates belowground plant-plant communication triggered by root nematode infection, finding that nematode-free roots emit signals leading to compensatory growth in neighboring plants.
DOI 10.1016/j.pedobi.2020.150688 - MicrobiologybioRxiv
Characterization of the gut DNA and RNA viromes in a cohort of Chinese residents and visiting Pakistanis
Q. Yan, Y. Wang, X. Chen…·T. Ma
This study compares the gut DNA and RNA viromes of Chinese residents and Pakistani visitors, finding ethnic origin significantly influences virome composition and diversity.
DOI 10.1093/ve/veab022 - Cancer BiologybioRxiv
Myeloid lncRNA LOUP Mediates Opposing Regulatory Effects of RUNX1 and RUNX1-ETO in t(8;21) AML
B. Q. Trinh, S. Ummarino, A. K. Ebralidze…·D. G. Tenen
The paper identifies the long noncoding RNA LOUP as a mediator of RUNX1 and RUNX1-ETO effects in t(8;21) AML, showing it promotes myeloid differentiation and inhibits cell growth by regulating PU.1 expression.
DOI 10.1182/blood.2020007920 - PathologybioRxiv
Comparison of decidual vasculopathy in central and peripheral regions of placenta with implication of lateral growth and spiral artery remodeling
The paper compares decidual vasculopathy in central and peripheral placental regions, finding more vasculopathy in the periphery but more regeneration in the center, with no effect of preeclampsia.
- Cancer BiologybioRxivPreprint
Cancer exosomes harbor diverse hypoxia-targeted mRNAs and contribute toward tumor angiogenesis
P. Zhang, S. B. Lim, K. Jiang…·C. T. Lim
This study identifies hypoxia-targeted mRNAs in cancer exosomes that promote angiogenesis and reprogram recipient cells.
DOI 10.1101/2020.06.12.147850 - Cancer BiologybioRxivPreprint
Comparative Modeling of CDK9 Inhibitors to Explore Selectivity and Structure-Activity Relationships
P. Kirubakaran, G. Morton, P. Zhang…·J. Karanicolas
The paper develops a comparative modeling approach to study CDK9 inhibitor selectivity and structure-activity relationships, using existing PDB data and validating with a crystal structure.
DOI 10.1101/2020.06.08.138602 - ImmunologybioRxiv
Broad and strong memory CD4+ and CD8+ T cells induced by SARS-CoV-2 in UK convalescent COVID-19 patients.
T. Dong, Y. Peng, A. J. Mentzer…·Lopez-C
This study examines T cell immunity in UK COVID-19 patients, finding stronger and broader memory T cell responses in severe cases, with implications for vaccine design.
DOI 10.1038/s41590-020-0782-6 - MicrobiologybioRxiv
Cytoplasmic CPSF6 regulates HIV-1 capsid trafficking and infection in a cyclophilin A-dependent manner
Z. Zhong, J. Ning, E. A. Boggs…·Z. Ambrose
The paper shows CPSF6 and CypA interact to regulate HIV-1 capsid trafficking and infection by affecting capsid-CPSF6 complex formation and stability.
DOI 10.1128/mbio.03142-20 - BiophysicsbioRxiv
Serial cryoFIB/SEM reveals profound cytoarchitectural disruptions caused by a pathogenic mutation in Leigh syndrome patient cells
Y. Zhu, D. Sun, A. Schertel…·p. zhang
The paper uses serial cryoFIB/SEM to show cytoarchitectural disruptions in Leigh syndrome patient fibroblasts due to a USMG5 mutation.
- PhysiologybioRxiv
Single Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis
F. Henriques, A. H. Bedard, A. Guilherme…·M. P. Czech
This study shows that adipocyte signals can drive iWAT browning through macrophage-like cells, independent of sympathetic nerves.
- PathologyReproductive MedicinePeer-reviewed
Expression of Wilm's Tumor Gene in Endometrium with Potential Link to Gestational Vascular Transformation
The paper examines WT1 expression in endometrium across different physiological and pathological conditions, linking it to progesterone effects and gestational vascular changes.
- BiophysicsbioRxiv
A Workflow for Protein Structure Determination from Thin Crystal Lamella by Micro-Electron Diffraction
E. V. Beale, D. G. Waterman, J. van Rooyen…·p. zhang
The paper presents a workflow for microED that enables routine atomic structure determination of protein crystals of any size and shape, demonstrated with proteinase K to 2.0 Å resolution.
DOI 10.3389/fmolb.2020.00179 - Plant BiologybioRxiv
MeSSII interplays the amylose and amylopectin biosynthesis by protein interactions in cassava storage root
S. He, X. Hao, S. Wang…·P. Zhang
This study identifies MeSSII's role in cassava starch biosynthesis by forming protein complexes with other enzymes, affecting amylose and amylopectin synthesis.
DOI 10.1093/jxb/erac022 - BiochemistrybioRxiv
Genetically Encoded, Multivalent Liquid Glycan Array (LiGA)
M. Sojitra, S. Sarkar, J. Maghera…·R. Derda
The paper introduces LiGA, a platform for analyzing glycan-lectin interactions using DNA barcoded phage displaying glycans, enabling in vitro and in vivo binding studies.
DOI 10.1038/s41589-021-00788-5 - Pharmacology & ToxicologybioRxiv
Development of A Novel Highly Selective TLR8 Agonist for Cancer Immunotherapy
Y. Wang, H. Yang, H. Li…·D. Gao
This paper describes the development of DN052, a novel TLR8 agonist with high potency and selectivity, showing strong antitumor activity and favorable safety profile, leading to phase I clinical trials.
- Cancer BiologybioRxivPreprint
LZTR1 inactivation promotes MAPK/ ERK pathway activation in glioblastoma by stabilizing oncoprotein RIT1
Y. Wang, J. Zhang, P. Zhang…·D. Lu
This study shows that LZTR1 inactivation in glioblastoma stabilizes RIT1, leading to MAPK/ERK pathway activation and promoting tumor growth.
DOI 10.1101/2020.03.14.989954 - ZoologybioRxiv
Transcriptome analysis of the Nematode Caenorhabditis elegans in acidic stress environments
Y. Cong, H. Yang, P. Zhang…·L. Zhang
This study investigates the transcriptomic response of Caenorhabditis elegans to acidic stress environments, identifying two major pathways involved in cuticle synthesis and xenobiotic metabolism.
DOI 10.3389/fphys.2020.01107 - Cell BiologybioRxiv
Composition of the Lipid Droplets of the Bovine Corpus Luteum
H. A. Talbott, M. R. Plewes, C. Krause…·J. S. Davis
The paper identifies the composition and characteristics of lipid droplets in bovine luteal tissue, showing they store cholesteryl esters and triglycerides, and differ from other bovine tissues.
DOI 10.1038/s41598-020-68091-2 - Plant BiologybioRxiv
Low ribosomal RNA genes copy number provoke genomic instability and chromosomal segment duplication events that modify global gene expression and plant-pathogen response
A. Picart-Picolo, S. Grob, N. Picault…·F. Pontvianne
This study shows that reducing rRNA gene copies in Arabidopsis leads to genomic instability, chromosomal duplications, and altered gene expression, including enhanced resistance to pathogens.
DOI 10.1101/gr.261586.120 - ImmunologybioRxivPreprint
Bacillus subtilis spore induces efficient generation of memory T cells via ICAM-1 expression on dendritic cells
L. Huang, J. Lin, Y. Li…·Q. Yang
This study shows that Bacillus subtilis spore enhances mucosal immunity by promoting intestinal-resident memory T cells through ICAM-1 expression on dendritic cells.
DOI 10.1101/2020.01.20.912584 - Evolutionary BiologybioRxiv
On the origin and evolution of RNA editing in metazoans
Q. Li, P. Zhang, J. Li…·G. Zhang
The paper investigates the origin and evolution of A-to-I RNA editing in metazoans, finding it emerged in the common ancestor and is nonadaptive in most regions except for specific taxa.
DOI 10.1016/j.celrep.2023.112112 - BiochemistrybioRxivPreprint
Accumulation of an unprecedented 5'-deoxyadenos-4'-yl radical unmasks the kinetics of the radical-mediated C-C bond formation step in MoaA catalysis
H. Pang, E. A. Lilla, P. Zhang…·K. Yokoyama
This paper characterizes the kinetics of the radical-mediated C-C bond formation in MoaA, revealing a shunt pathway and determining the rate of the 3',8-cyclization step.
DOI 10.1101/2020.01.16.909697