Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
7 papers
Recent·Most cited
J. Bromley, S. K. C. Ganchua, S. K. Nyquist, P. Maiello, M. Chao, H. J. Borish, M. Rodgers, J. Tomko, K. Kracinovsky, D. Mugahid, S. N. Nguyen, D. Wang, J. M. Rosenberg, E. C. Klein, H. P. Gideon, , J. L. Flynn
The paper shows that CD4+ T cells reduce inflammation and disease severity during Mtb reinfection by reprogramming CD8+ T cells and innate immune cells.
bioRxiv · Dec 20, 2023 · PreprintImmunology
J. M. Peters, E. B. Irvine, J. M. Rosenberg, M. H. Wadsworth, T. K. Hughes, M. Sutton, S. K. Nyquist, J. D. Bromley, R. Mondal, M. Roederer, R. Seder, P. A. Darrah, J. L. Flynn, A. K. Shalek, S. M. Fortune, B. D. Bryson
This study shows that high-dose IV BCG vaccination in rhesus macaques enhances airway immune signaling and cellular responses, improving protection against Mtb.
bioRxiv · Jul 16, 2023 · PreprintImmunology
S. Jaiswal, S. Boyce, S. K. Nyquist, T. Jivanjee, S. Ibrahim, J. D. Bromley, G. J. Gatter, H. Gideon, K. Patel, S. K. Ganchua, B. Berger, S. M. Fortune, J. Flynn, A. K. Shalek, S. M. Behar
The paper characterizes the T cell receptor repertoire in Cynomolgus macaques using single-cell RNA sequencing and identifies similarities with human and Rhesus macaque TCR repertoires.
bioRxiv · Mar 30, 2022Immunology
R. Fardoos, S. K. Nyquist, O. E. Asowata, S. W. Kazer, A. Singh, A. N. Ngoepe, J. G. Giandhari, N. M. Mthabela, D. Ramjit, S. Singh, F. Karim, S. Buus, F. Anderson, J. Z. Porterfield, A. L. Sibiya, , H. N. Kloverpris
The paper examines HIV-specific CD8+ T-cells in tonsils, finding they exhibit TRM-like exhaustion signatures compared to blood, with differences in natural HIV controllers.
bioRxiv · Nov 4, 2021 · PreprintImmunology
H. P. Gideon, T. K. Hughes, C. N. Tzouanas, M. H. Wadsworth, A. A. Tu, T. M. Gierahn, J. M. Peters, F. H. Hopkins, J.-R. Wei, C. Kummerlowe, N. L. Grant, K. Nargan, J. Phuah, H. J. Borish, P. Maiello, , A. K. Shalek
The paper identifies cellular and temporal factors associated with bacterial control in tuberculosis granulomas using multimodal data.
bioRxiv · Oct 24, 2020 · PreprintImmunology
S. W. Kazer, T. P. Aicher, D. M. Muema, S. L. Carroll, J. Ordovas-Montanes, C. G. K. Ziegler, S. K. Nyquist, E. B. Wong, N. Ismail, M. Dong, A. Moodley, K. L. Dong, Z. M. Ndhlovu, T. Ndung'u, B. D. Walker, A. K. Shalek
The paper uses single-cell RNA-sequencing to study immune dynamics in HIV-1 infection, identifying key cellular responses and their temporal progression in untreated individuals.
bioRxiv · May 30, 2019 · PreprintImmunology
J. Ordovas-Montanes, D. F. Dwyer, S. K. Nyquist, K. M. Buchheit, C. Deb, M. H. Wadsworth, T. K. Hughes, S. W. Kazer, E. Yoshimoto, N. Bhattacharyya, H. R. Katz, T. M. Laidlaw, J. A. Boyce, N. A. Barrett, A. K. Shalek
This study profiles single-cell RNA-seq data from human respiratory tissues to show reduced epithelial diversity and altered basal progenitor states in type 2 immunity-driven diseases.
bioRxiv · Nov 14, 2017Immunology