Author
X. Li
InsigneoPrimary ORCID profile (0000-0002-0881-5381 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2022-2022 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 11 mutual co-author links610 papers
Recent·Most cited
- ImmunologybioRxivPreprintDOI 10.1101/2022.11.30.518545
- MicrobiologybioRxivPreprint
Different tissues in the maternal-fetal interface harbor distinct microbiomes showing associations related to their anatomical position or function
X. Li, W. Jiang, L. Dai…·M. Fang
The study analyzes microbiome profiles across maternal-fetal tissues, revealing distinct microbial compositions and correlations based on anatomical position.
DOI 10.1101/2022.11.29.518443 - Cell BiologybioRxivPreprint
A non-invasive, fast on/off 'Odourgenetic' Method to Manipulate Physiology
This paper introduces an Odourgenetic method using Drosophila odorant receptors to non-invasively and rapidly manipulate cellular functions and behavior through inhalation of 2-pentanone.
DOI 10.1101/2022.11.25.517891 - BiophysicsbioRxiv
Free volume theory explains the unusual behavior of viscosity in a non-confluent tissue during morphogenesis
R. Das, S. Sinha, X. Li…·D. Thirumalai
The paper uses simulations to show that cell size polydispersity and deformability explain the viscosity plateau in non-confluent zebrafish tissue beyond a critical packing fraction.
DOI 10.7554/elife.87966 - BiophysicsbioRxivPreprint
Topological transitions, turbulent-like motion and long-time-tails driven by cell division in biological tissues
X. Li, S. Sinha, T. R. Kirkpatrick, D. Thirumalai
The paper shows that cell division and apoptosis in epithelial monolayers generate turbulent-like flows with energy spectra and velocity correlations similar to inertial turbulence.
DOI 10.1101/2022.11.25.518002 - Cell BiologybioRxivPreprint
Fast actin disassembly and fimbrin mechanosensitivity support rapid turnover during clathrin-mediated endocytosis
S. I. Mousavi, M. M. Lacy, X. Li, J. Berro
The paper develops a stochastic model to explain dwell time distributions of actin and fimbrin during clathrin-mediated endocytosis in yeast, showing fast actin disassembly and mechanosensitive fimbrin detachment.
DOI 10.1101/2022.11.25.517735 - Pharmacology & ToxicologybioRxiv
Toxicity impacts on human adipose MSCs acutely exposed to Aroclor and non-Aroclor mixtures of PCBs.
R. M. Behan-Bush, J. N. Liszewski, M. V. Schrodt…·J. A. Ankrum
This study examines the toxicity of PCB mixtures on human adipose MSCs, finding two types of toxicity that impair growth and function.
DOI 10.1021/acs.est.2c07281 - Animal Behavior & CognitionbioRxiv
Spatial Localization Ability of Planarians Identified Through the Light Maze Paradigm
R. Qian, Y. Yan, Y. Zhang…·K. Huang
This paper demonstrates that planarians can navigate to a previously recognized location in a new maze, indicating they have spatial localization ability.
DOI 10.1371/journal.pone.0288118 - Cell BiologybioRxiv
Lysosomes mediate the mitochondrial UPR via mTORC1-dependent ATF4 phosphorylation
T. Y. Li, Q. Wang, A. W. Gao…·J. Auwerx
This study shows lysosomes mediate the mitochondrial UPR through mTORC1-dependent ATF4 phosphorylation, essential for mitochondrial redox homeostasis and cell survival under stress.
DOI 10.1038/s41421-023-00589-1 - MicrobiologybioRxivPreprint
Inhibition of proline tyrosine kinase 2 (Pyk2) phosphorylation during adherent-invasive Escherichia coli infection inhibits intra-macrophage replication and inflammatory cytokine release
X. Li, M. J. Ormsby, G. Fallata…·D. M. Wall
This study shows that inhibiting Pyk2 reduces AIEC replication in macrophages and inflammatory cytokine release, suggesting a potential therapeutic target for Crohn's Disease.
DOI 10.1101/2022.11.14.516411 - MicrobiologybioRxivPreprint
Membrane-remodeling protein ESCRT-III homologs incarnate the evolution and morphogenesis of multicellular magnetotactic bacteria
W. Zhang, J. Chen, J. DAI…·L.-F. Wu
This study identifies ESCRT-III homologs in magnetotactic bacteria, showing their role in membrane remodeling and multicellular morphogenesis through genomic and imaging analyses.
DOI 10.1101/2022.11.08.515611 - Cell BiologybioRxiv
Aryl hydrocarbon receptor utilises cellular zinc signals to maintain the gut epithelial barrier
X. Hu, W. Xiao, Y. Lei…·C. Hogstrand
This study shows that AHR activation by dietary ligands improves gut barrier function via zinc-dependent pathways, highlighting the role of zinc in AHR signaling and its protective effects against IBD.
- BioengineeringbioRxiv
Bio-friendly long-term subcellular dynamic recording by self-supervised image enhancement microscopy
G. Zhang, X. Li, Y. Zhang…·Q. Dai
This paper introduces DeepSeMi, a self-supervised denoising framework that enhances fluorescence microscopy by increasing SNR and enabling long-term, high-resolution imaging of cellular processes.
- MicrobiologybioRxivPreprint
Molecular Mechanism for Bacterial Degradation of Plant Hormone Auxin
Y. Ma, X. Li, F. Wang…·H. Zhang
This study identifies AdgB and AdgI as key proteins in the Variovorax auxin-degradation operon, revealing their roles in IAA uptake and conversion to oxIAA, and demonstrates the operon's potential for IAA regulation in E. coli.
DOI 10.1101/2022.11.01.514793 - Cancer BiologybioRxiv
In-vivo characterization of glutamine metabolism identifies therapeutic targets in clear cell renal cell carcinoma
A. Kaushik, L. K. Burroughs, A. Tarangelo…·R. J. DeBerardinis
The paper identifies multiple glutamine metabolism pathways in ccRCC tumorgrafts and shows that targeting amidotransferase activity reduces tumor growth.
DOI 10.1126/sciadv.abp8293 - Evolutionary BiologybioRxivPreprint
Polygenic Effects on the Z Chromosome Underlie Hybrid Incompatibility in Papilio and Heliconius Butterflies
T. Xiong, S. Tarikere, N. Rosser…·J. Mallet
This study identifies a polygenic mechanism on the Z chromosome causing hybrid incompatibility in butterflies, explaining Haldane's Rule and the large-X/Z effect through introgression skew and variability.
DOI 10.1101/2022.10.28.514284 - Plant BiologybioRxiv
Chromosome-level genome assembly of Torreya grandis provides insights into the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis
The paper presents a chromosome-level genome assembly of T. grandis and identifies genes responsible for gymnosperm-specific sciadonic acid biosynthesis.
DOI 10.1038/s41467-023-37038-2 - Cell BiologybioRxiv
Mechanical force induces DRP1-dependent asymmetrical mitochondrial fission for quality control
X. Liu, L. Xu, Y. Song…·L. Duan
The paper shows mechanical force induces DRP1-dependent asymmetrical mitochondrial fission, leading to mtDNA-free fragments that recruit Parkin proteins.
DOI 10.1073/pnas.2217019121 - Cell BiologybioRxivPreprint
miR-148a-3p inhibits osteogenesis by targeting Itga11 via PI3K/Akt/GSK3/β-catenin pathway
DOI 10.1101/2022.10.23.513322 - BiophysicsbioRxiv
Structural basis for preservation of a subset of Topologically Associating Domains in Interphase Chromosomes upon cohesin depletion
D. JEONG, G. Shi, X. Li, D. Thirumalai
The paper shows that some Topologically Associating Domains (TADs) persist without cohesin, supported by Hi-C data, polymer simulations, and 3D structural analysis in mouse and human cells.
- Cell BiologybioRxivPreprint
Structure of a G protein-coupled receptor with GRK2 and a biased ligand
J. Duan, H. Liu, Y. Ji…·H. E. Xu
The paper reports the structure of NTSR1 bound to GRK2, Gq, and a biased ligand, revealing how the ligand enhances GRK2 binding and enables arrestin-biased signaling.
DOI 10.1101/2022.10.19.512855 - Cancer BiologybioRxivPreprint
FGFR1 governs iron metabolism via regulating post-translational modification of IRP2 in prostate cancer cells
C. Wang, H. Lin, X. Li…·S. Lin
This study shows FGFR1 promotes prostate cancer by enhancing iron metabolism through regulation of IRP2 post-translational modification and TFR1 expression.
DOI 10.1101/2022.10.17.512481 - PhysiologybioRxiv
Vitamin B2 enables peroxisome proliferator-activated receptor α regulation of fasting glucose availability
P. M. Masschelin, P. Saha, S. A. Ochsner…·S. M. Hartig
This study shows that vitamin B2 deficiency impairs PPAR regulation of fasting glucose, and PPAR agonists can rescue this defect.
DOI 10.7554/elife.84077 - BioengineeringbioRxivPreprint
Precisely patterned nanofibers made from extendable protein multiplexes
N. P. Bethel, A. J. Borst, F. Parmeggiani…·D. Baker
The paper designs extendable protein multiplexes with symmetric architectures to create precisely patterned nanofibers through controlled repeat propagation and hydrophilic patch placement.
DOI 10.1101/2022.10.14.511843 - Animal Behavior & CognitionbioRxivPreprint
Diving Behavior Reveals Humidity Sensing Ability of Water Deprived Planarians
Y. Pei, R. Qian, Y. Yan…·K. Huang
This study shows that aquatic planarians can sense humidity and use this ability to find water during drought by diving behavior.
DOI 10.1101/2022.10.12.511880 - BiophysicsSciencePeer-reviewed
Hallucinating protein assemblies
B. I. M. Wicky, L. F. Milles, A. Courbet…·D. Baker
Deep network-based protein design generates symmetric homo-oligomers with high structural accuracy, demonstrating the potential for creating novel nanomachines and biomaterials.
DOI 10.1126/science.add1964 - Cancer BiologybioRxivPreprint
A Novel Mouse Model that Recapitulates the Heterogeneity of Human Triple Negative Breast Cancer
Z. O. Doha, X. Wang, N. Calistri…·R. C. Sears
This paper develops a novel mouse model of TNBC by combining MYC amplification and PTEN deletion, showing it recapitulates human TNBC heterogeneity through omic analyses.
DOI 10.1101/2022.10.07.511231 - Cell BiologybioRxiv
Nuclear autophagy interactome unveils WSTF as a constitutive nuclear inhibitor of inflammation
Y. Wang, V. V. Eapen, A. Kournoutis…·Z. Dou
The paper identifies WSTF as a nuclear inhibitor of inflammation degraded by autophagy, showing its role in inflammation, cancer, and immune surveillance.
- BiophysicsbioRxiv
CryoFIB milling large tissue samples for cryo-electron tomography
S. Wang, H. Zhou, W. Chen…·X. Li
This paper introduces a cryoFIB milling workflow for isolating objects of interest from large tissue samples, resulting in thin lamellae suitable for cryo-electron tomography.
DOI 10.1038/s41598-023-32716-z - Plant BiologybioRxiv
Understanding water conservation vs. profligation traits in vegetable legumes through a physio-transcriptomic-functional approach
P. Fang, T. Sun, A. K. Pandey…·P. Xu
This study compares water use strategies in soybean and cowpea under drought using phenomic and transcriptomic analyses, identifying gene networks and regulatory mechanisms underlying their contrasting responses.
DOI 10.1093/hr/uhac287