Author
Y. Xie
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2024 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 37 mutual co-author links102 papers
Recent·Most cited
- Pharmacology & ToxicologybioRxiv
Metformin protects against insulin resistance induced by high uric acid in cardiomyocytes via AMPK signaling pathways in vitro and in vivo
DOI 10.1111/jcmm.16677 - BiophysicsbioRxiv
Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2
Y. Xie, B. P. Clarke, Y. J. Kim…·Y. Ren
The paper presents a cryo-EM structure of the yeast THO*Sub2 complex and shows its interaction with the SR-like protein Gbp2, suggesting a role in mRNP maturation.
- MicrobiologybioRxivPreprint
A novel fermented Yi traditional medicine efficiently suppresses the replication of SARS-CoV-2 in vitro
S. Fang, B. Xu, X. Song…·X. Yang
This study investigates a fermented Yi traditional medicine, JB10, showing significant in vitro suppression of SARS-CoV-2 replication with EC50 of 769.1 dilutions and a selection index of 42.68.
DOI 10.1101/2020.12.29.424534 - BioengineeringbioRxiv
Engineered Red Blood Cells Carrying PCSK9 Inhibitors Persistently Lower LDL and Prevent Obesity
R. Deshycka, V. Sudaryo, N.-J. Huang…·N. Pishesha
This study develops engineered red blood cells expressing a PCSK9 inhibitor to lower LDL and prevent obesity in mice.
DOI 10.1371/journal.pone.0259353 - BiophysicsbioRxivPreprint
Structural basis for repurpose and design of nucleoside drugs for treating COVID-19
W. Yin, X. Luan, Z. Li…·H. E. Xu
The paper reports cryo-EM structures of SARS-CoV-2 RdRp with nucleoside inhibitors, revealing their mechanism and guiding the design of more potent derivatives.
DOI 10.1101/2020.11.01.363812 - Cancer BiologybioRxivPreprint
Counterfactual Hypothesis Testing of Tumor Microenvironment Scenarios Through Semantic Image Synthesis
D. Li, J. L. Chen, Q. Ma…·I. Pe'er
The paper introduces a generative model to test hypotheses about cell-cell interactions in tumor microenvironments using synthetic multiplexed images.
DOI 10.1101/2020.10.27.358101 - MicrobiologybioRxiv
Comparative analysis reveals the species-specific genetic determinants of ACE2 required for SARS-CoV-2 entry
W. Ren, G. Hu, X. Zhao…·Q. Ding
The paper identifies species-specific genetic differences in ACE2 that determine SARS-CoV-2 entry capability and shows that humanizing these residues in koala and mouse ACE2 enables viral entry.
- Cancer BiologybioRxiv
Subtype Heterogeneity and Epigenetic Convergence in Neuroendocrine Prostate Cancer
P. Cejas, Y. Xie, A. Font-Tello…·H. W. Long
This study identifies two distinct subtypes of neuroendocrine prostate cancer based on neuronal transcription factors and highlights their epigenetic convergence and therapeutic implications.
DOI 10.1038/s41467-021-26042-z - ImmunologybioRxivPreprint
A key linear epitope for a potent neutralizing antibody to SARS-CoV-2 S-RBD
T. Li, X. Han, Y. Wang…·A. Jin
This study identifies a linear epitope on SARS-CoV-2 S-RBD recognized by a potent neutralizing antibody and shows its potential for vaccine design.
DOI 10.1101/2020.09.11.292631 - PhysiologybioRxiv
Mfge8 attenuates human gastric antrum smooth muscle contractions
W. Li, A. Olseen, Y. Xie…·B. A. Perrino
This study shows that Mfge8 inhibits human gastric antrum smooth muscle contractions by reducing MYPT1 phosphorylation and LC20 phosphorylation through its interaction with 8β1 integrin.
DOI 10.1007/s10974-021-09604-y - BioengineeringbioRxiv
Engineered Trimeric ACE2 Binds and Locks "Three-up" Spike Protein to Potently Inhibit SARS-CoVs and Mutants
L. Guo, W. Bi, X. Wang…·B. Dang
This study engineers a trimeric ACE2 protein that binds the spike protein with high affinity, inhibiting SARS-CoVs and mutants by locking the spike in a 'three-up' conformation.
DOI 10.1038/s41422-020-00438-w - MicrobiologybioRxiv
The S1/S2 boundary of SARS-CoV-2 spike protein modulates cell entry pathways and transmission
Y. Zhu, F. Feng, G. Hu…·R. Zhang
This study shows that the S1/S2 boundary of the SARS-CoV-2 spike protein affects cell entry and transmission by altering the pathway used for viral entry.
DOI 10.1038/s41467-021-21213-4 - ImmunologybioRxiv
A rapid and efficient screening system for neutralizing antibodies and its application for the discovery of potent neutralizing antibodies to SARS-CoV-2 S-RBD
X. Han, Y. Wang, S. Li…·A. Jin
This paper introduces a rapid screening system to identify potent neutralizing antibodies against SARS-CoV-2 and demonstrates its effectiveness in discovering high-potency antibodies.
DOI 10.3389/fimmu.2021.653189 - Cancer BiologybioRxiv
Relationship Between Neuroendocrine and Immune Gene Expression in Small Cell Lung Cancer
L. Cai, H. Liu, F. Huang…·A. F. Gazdar
This study examines the relationship between neuroendocrine and immune gene expression in SCLC, finding that variant SCLC tumors regain immune gene expression and exhibit higher tumor-immune interactions.
DOI 10.1038/s42003-021-01842-7 - Cell BiologybioRxiv
Combinatorial deployment of F-actin regulators to build complex 3D actin structures in vivo
The paper investigates how multiple actin regulators coordinate to form complex 3D actin structures in vivo, identifying distinct roles and cooperative interactions among seven ANRPs.
DOI 10.7554/elife.63046 - Evolutionary BiologybioRxivPreprint
Proto-sex locus in large yellow croaker provides insights into early evolution of the sex chromosome
Z. Wang, S. Xiao, M. Cai…·J.-T. Li
The paper identifies a proto-sex locus in large yellow croaker, showing reduced recombination and dmrt1 expression in testis development and shared functional links between genetic sex determination and environmental sex reversal.
DOI 10.1101/2020.06.23.166249 - ImmunologybioRxivPreprint
Glucocorticoid treatment exacerbates mycobacterial infection by reducing the phagocytic capacity of macrophages
Y. Xie, A. H. Meijer, M. Schaaf
This study shows glucocorticoids reduce macrophage phagocytosis, increasing bacterial burden in a zebrafish tuberculosis model, which may explain increased susceptibility to tuberculosis in humans.
DOI 10.1101/2020.06.19.161653 - MicrobiologyCell Host & MicrobePeer-reviewed
Fully human single-domain antibodies against SARS-CoV-2
This paper develops fully human single-domain antibodies against SARS-CoV-2 and identifies their neutralizing activity and immunogenic profile compared to SARS-CoV and MERS-CoV.
DOI 10.1016/j.chom.2020.04.023 - MicrobiologybioRxiv
Immunization with the receptor-binding domain of SARS-CoV-2 elicits antibodies cross-neutralizing SARS-CoV-2 and SARS-CoV without antibody-dependent enhancement
J. Zang, C. Gu, B. Zhou…·Z. Huang
This study shows that immunization with SARS-CoV-2 RBD induces antibodies that neutralize both SARS-CoV-2 and SARS-CoV without causing antibody-dependent enhancement.
DOI 10.1038/s41421-020-00199-1 - BiophysicsbioRxiv
Seesaw Conformations of Npl4 in the Human p97 Complex and the Inhibitory Mechanism of a Disulfiram Derivative
M. Pan, Q. Zheng, Y. Yu…·M. Zhao
This study identifies three Npl4 conformational states in the human p97 complex using cryo-EM and shows how a disulfiram derivative inhibits p97 by disrupting Npl4 zinc finger interactions.
- PathologybioRxivPreprint
Pericyte-specific vascular expression of SARS-CoV-2 receptor ACE2 - implications for microvascular inflammation and hypercoagulopathy in COVID-19
L. He, M. A. Mae, L. Muhl…·C. Betsholtz
The paper shows that pericytes, not endothelial cells, express ACE2 in microvessels, suggesting they may be infected in COVID-19 and contribute to microvascular inflammation and hypercoagulopathy.
DOI 10.1101/2020.05.11.088500 - BiochemistrybioRxivPreprint
Identification of PDE6D as a potential target of sorafenib via PROTAC technology
Y. Li, Q. Meng, P. Wang…·N. Huang
This study identifies PDE6D as a potential target of sorafenib using PROTAC technology and proteomic analysis.
DOI 10.1101/2020.05.06.079947 - MicrobiologybioRxivPreprint
Protoporphyrin IX and verteporfin prevent SARS-CoV-2 infection in vitro and in a mouse model expressing human ACE2
This study shows that protoporphyrin IX and verteporfin inhibit SARS-CoV-2 infection in vitro and in a human ACE2-expressing mouse model by blocking ACE2-S protein interaction.
DOI 10.1101/2020.04.30.071290 - MicrobiologybioRxiv
Functional and Genetic Analysis of Viral Receptor ACE2 Orthologs Reveals a Broad Potential Host Range of SARS-CoV-2
Y. Liu, G. Hu, Y. Wang…·Q. Ding
This study identifies ACE2 orthologs from diverse species that can support SARS-CoV-2 entry, suggesting a broad host range for the virus.
- ImmunologybioRxiv
Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma
Y. Kong, C. Xu, C. Cui…·J. Guo
The paper identifies an immunosuppression signature (IMS) and shows that its ratio to an IFN-γ signature better predicts anti-PD-1 therapy response in melanoma than existing biomarkers.
DOI 10.1038/s41525-021-00169-w - Cell BiologyProtein & CellPeer-reviewed
Recapitulation of SARS-CoV-2 Infection and Cholangiocyte Damage with Human Liver Organoids
B. Zhao, C. Ni, R. Gao…·X. Lin
This study uses human liver organoids to show SARS-CoV-2 infects cholangiocytes, disrupts bile transport, and causes liver damage, suggesting targeting viral effects on the liver could improve COVID-19 treatment.
- ZoologybioRxiv
Transcriptome analysis of the Nematode Caenorhabditis elegans in acidic stress environments
Y. Cong, H. Yang, P. Zhang…·L. Zhang
This study investigates the transcriptomic response of Caenorhabditis elegans to acidic stress environments, identifying two major pathways involved in cuticle synthesis and xenobiotic metabolism.
DOI 10.3389/fphys.2020.01107 - BioengineeringbioRxiv
Long-term in vivo Monitoring of Gliotic Sheathing of Ultrathin Entropic Coated Brain Microprobes with Fiber-based Optical Coherence Tomography
I. Dryg, Y. Xie, M. Bergmann…·U. Hofmann
This study uses OCT to monitor long-term tissue response around brain implants, finding that Parylene coatings do not reduce glial encapsulation.