Author
H. Huang
Children's Hospital of Philadelphia
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2024 · peak 33/yrCo-Author Collaboration Network
10 top collaborators · 35 mutual co-author links121 papers
Recent·Most cited
- Scientific Communication & EducationbioRxivPreprint
Naming Human Diseases: Ethical Principles of Curating Exclusive Substitute for Inopportune Nosology
Z. Hu, Y. Chen, Y. Song…·H. Huang
The paper examines ethical issues in disease naming and proposes a method using deep learning to find suitable substitutes for outdated disease names.
DOI 10.1101/2021.05.01.442270 - PhysiologybioRxiv
Integrative Omics Reveals Subtle Molecular Perturbations Following Ischemic Conditioning in a Porcine Kidney Transplant Model
D. P. O'Brien, A. M. Thorne, H. Huang…·B. M. Kessler
This study uses integrative omics to detect subtle molecular changes in porcine kidneys after remote ischemic conditioning, finding reduced inflammation and potential fibrosis markers.
DOI 10.1186/s12014-022-09343-3 - Evolutionary BiologybioRxiv
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
Z. Huang, I. Furo, V. Peona…·L. Xu
This study identifies recurrent chromosome fusions and gene losses in parrots, revealing the role of transposable elements and genetic drift in neo-sex chromosome evolution.
DOI 10.1038/s41467-022-28585-1 - BiochemistrybioRxivPreprint
Destruction of DNA-binding proteins by programmable O'PROTAC: Oligonucleotide-based PROTAC
J. Shao, Y. Yan, D. Ding…·H. Huang
This paper develops OPROTACs, programmable molecules that degrade DNA-binding proteins like ERG and LEF1, showing potential for targeting undruggable transcription factors in cancer.
DOI 10.1101/2021.03.08.434493 - Cell BiologybioRxiv
AIM-CICs: automatic identification method for Cell-in-cell structures based on convolutional neural network
M. Tang, Y. Su, W. Zhao…·Q. Sun
This study develops AIM-CICs, an AI-based method using CNN to automatically identify and classify cell-in-cell structures, improving efficiency and accuracy over manual methods.
DOI 10.1093/jmcb/mjac044 - Animal Behavior & CognitionbioRxivPreprint
A water-reward task assay for evaluating mouse mutualistic cooperative behavior
W. Feng, Y. Zhang, Z. Wang…·M. Xiao
This paper introduces a water-reward task assay to quantify mutualistic cooperative behavior in mice and provides detailed procedures for its implementation.
DOI 10.1101/2021.02.06.430037 - Cancer BiologybioRxiv
Cell lineage as a predictor of immune response in neuroblastoma
S. Sengupta, S. Das, A. Crespo…·R. E. George
This study identifies cell lineage as a key determinant of immune response in neuroblastoma by analyzing transcriptional signatures from 498 tumors and showing that mesenchymal-like cells are more immunogenic than adrenergic neuron-like cells.
DOI 10.1038/s43018-022-00427-5 - ImmunologybioRxivPreprint
Decoding the single-cell landscape and intercellular crosstalk in the transplanted liver: a 4-dimension mouse model
H. Huang, X. Zhang, H. Chen…·Q. Ling
This study maps the cellular dynamics and intercellular interactions in a mouse liver transplant model using single-cell RNA sequencing and CyTOF, revealing recipient cell dominance and macrophage-driven metabolic remodeling.
- Cancer BiologybioRxiv
Agonistic CD40 antibody therapy induces tertiary lymphoid structures but impairs the response to immune checkpoint blockade in glioma
L. van Hooren, A. Vaccaro, M. Ramachandran…·A. Dimberg
This study shows that agonistic CD40 antibody therapy in glioma models causes T cell dysfunction and reduces response to checkpoint inhibitors, but also promotes tertiary lymphoid structures associated with improved T cell infiltration.
DOI 10.1038/s41467-021-24347-7 - Plant BiologybioRxiv
Primary restriction of S-RNase cytotoxicity by a stepwise ubiquitination and degradation pathway in Petunia hybrida
H. Zhao, Y. Song, J. Li…·Y. Xue
Biochemical and transgenic analyses reveal that Petunia hybrida S3-RNase cytotoxicity is largely restricted by a stepwise ubiquitination and degradation pathway during cross-pollination.
DOI 10.1111/nph.17438 - Evolutionary BiologybioRxivPreprint
Phenotypic plasticity, population structure and adaptation in a young weed species with a worldwide distribution
A. Cornille, M. Tiret, A. Salcedo…·M. Lascoux
This study investigates the roles of phenotypic plasticity and genetic adaptation in the rapid global spread of the weed Capsella bursa-pastoris through common garden experiments.
DOI 10.1101/2020.11.27.401562 - Cell BiologybioRxivPreprint
Knockdown of LC3 increases mitochondria-to-micronucleus transition
X. Jiang, B. Hou, E. Li…·Z. Xi
The paper shows that knocking down LC3 increases micronuclei by promoting mitochondria-to-micronuclei transition during nuclear development.
DOI 10.1101/2020.11.06.372144 - BiochemistrybioRxiv
Revisiting the phosphotyrosine binding pocket of Fyn SH2 domain led to the Identification of novel SH2 superbinders
S. Li, Y. Zou, D. Zhao…·H. Huang
This study uses directed evolution to identify SH2 domain variants with enhanced binding to phosphotyrosine peptides, revealing differences in cross-reactivity with sulfotyrosine.
DOI 10.1002/pro.4012 - BiochemistrybioRxivPreprint
An open interface in the pre-80S ribosome coordinated by ribosome assembly factors Tsr1 and Dim1 enables temporal regulation of Fap7
J. Rai, M. D. Parker, H. Huang…·M. E. Stroupe
The paper determines the structure of an 80S-like ribosome assembly intermediate, revealing how Tsr1 and Dim1 coordinate to regulate Fap7 and enable quality control during ribosome maturation.
DOI 10.1101/617910 - Cell BiologybioRxiv
Cytonemes with complex geometries and composition extend into invaginations of target cells
T. B. Kornberg, B. Wood, V. Baena…·M. Terasaki
The paper uses electron microscopy to reveal structural details of cytonemes in Drosophila, showing their variable diameters and contents, including ER, mitochondria, and ribosomes.
DOI 10.1083/jcb.202101116 - BiochemistrybioRxiv
Assembly factors chaperone rRNA folding by isolating helical junctions that are prone to misfolding
The paper identifies three-way junctions as prone to misfolding during ribosome assembly and shows how assembly factors and snoRNAs chaperone their folding to prevent kinetic trapping.
DOI 10.1073/pnas.2101164118 - ImmunologybioRxiv
The Clusters of Transcription Factors NFATC2, STAT5, GATA2, AP1,RUNX1 and EGR2 Binding Sites at the Induced Il13 Enhancers Mediate Il13 Gene Transcription in Response to Antigenic Stimulation
M. Kamran, J. Liang, B. Liu…·H. Huang
This study identifies Il13 enhancers that mediate gene transcription in response to antigenic stimulation by analyzing histone modifications and transcription factor binding sites.
- BioengineeringbioRxiv
Measuring expression heterogeneity of single-cell cytoskeletal protein complexes
J. Vlassakis, L. L. Hansen, R. Higuchi-Sanabria…·A. E. Herr
The paper introduces a method to measure single-cell cytoskeletal protein complex expression heterogeneity and finds some cells upregulate other cytoskeletal complexes in response to stress.
DOI 10.1038/s41467-021-25212-3 - BioengineeringbioRxiv
Direct Continuous EMG control of a Powered Prosthetic Ankle for Improved Postural Control after Guided Physical Training: a Case Study
A. Fleming, S. Huang, E. Buxton…·H. Huang
This case study investigates the feasibility of direct EMG control of a powered ankle prosthesis combined with physical therapy training to improve postural control in a transtibial amputee.
DOI 10.1017/wtc.2021.2 - BiophysicsbioRxiv
Age and gender dependence of liver diffusion parameters and the evidence of intravoxel incoherent motion modelling of perfusion component is constrained by diffusion component.
H. Huang, C.-J. Zheng, L.-F. Wang…·Y.-X. Wang
The paper establishes reference values for liver diffusion MRI parameters in middle-aged subjects and shows age and gender effects, with IVIM modeling indicating perfusion is constrained by diffusion.
- Cancer BiologybioRxivPreprint
A targetable epigenetic vulnerability in PI3K/AKT inhibitor resistant cancers
H. Huang, D. Wu, Y. Yan…·S. Ren
This study identifies an epigenetic vulnerability in PI3K/AKT inhibitor-resistant cancers, showing that targeting bromodomain or HDAC inhibitors can overcome resistance by modulating histone acetylation at growth factor/receptor gene loci.
- Cancer BiologybioRxiv
DDR1-INDUCED NEUTROPHIL EXTRACELLULAR TRAPS DRIVE PANCREATIC CANCER METASTASIS
J. Deng, Y. Kang, C.-C. Cheng…·J. B. Fleming
This study shows DDR1 signaling in pancreatic cancer cells promotes metastasis by inducing CXCL5 production, which recruits neutrophils to form extracellular traps that facilitate cancer cell invasion.
DOI 10.1172/jci.insight.146133 - BiophysicsbioRxiv
Disease-Linked Super-Trafficking of a Mutant Potassium Channel
H. Huang, L. M. Chamness, C. G. Vanoye…·C. Sanders
The paper investigates whether gain-of-function mutations in KCNQ1 cause super-trafficking of the potassium channel to the plasma membrane, finding increased surface levels and altered channel activity.
DOI 10.1016/j.jbc.2021.100423 - BiochemistrybioRxivPreprint
Structural basis for the inhibition of the papain-like protease of SARS-CoV-2 by small molecules
Z. Fu, B. Huang, J. Tang…·H. Huang
The paper identifies GRL0617 as a non-covalent inhibitor of SARS-CoV-2 PLpro with an IC50 of 2.1 μM, supported by co-crystal and NMR data showing its mechanism of action.
DOI 10.1101/2020.07.17.208959 - Animal Behavior & CognitionbioRxiv
Histone deacetylase inhibitor givinostat attenuates nonalcoholic steatohepatitis and liver fibrosis
G. Li, H. Huang, S. Fan…·G. Li
This study evaluates givinostat's efficacy in treating NASH by reducing inflammation and fibrosis in mouse models.
DOI 10.1038/s41401-021-00725-1 - Cancer BiologybioRxiv
Frizzled-7 Identifies Platinum Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis
Y. Wang, G. Zhao, S. Condello…·D. Matei
The paper identifies FZD7 as a marker of platinum-tolerant ovarian cancer cells that are susceptible to ferroptosis via the FZD7-β-catenin-Tp63-GPX4 pathway.
DOI 10.1158/0008-5472.can-20-1488 - BioengineeringbioRxiv
Controlling wireframe DNA origami nuclease degradation with minor groove binders
E.-C. Wamhoff, H. Huang, B. J. Read…·M. Bathe
This study demonstrates that minor groove binders can protect wireframe DNA origami from endonuclease degradation, enhancing their stability in biological environments.
DOI 10.1021/acsnano.1c11575 - ImmunologybioRxivPreprint
In vivo CRISPR screening identifies Fli1 as a transcriptional safeguard that restrains effector CD8 T cell differentiation during infection and cancer
Z. Chen, E. Arai, O. Khan…·J. Shi
The paper identifies Fli1 as a transcriptional regulator that limits effector CD8 T cell differentiation during infection and cancer, showing its deletion enhances TEFF responses and immunity.
DOI 10.1101/2020.05.20.087379