Author
J. Wang
Brigham and Women's Hospital
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2019-2019 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 32 mutual co-author links798 papers
Recent·Most cited
- MicrobiologybioRxiv
Regulation of Hepatic MicroRNAs in Response to Early Stage Echinococcus multilocularis Egg Infection in C57BL/6 mice
B. Gottstein, G. Boubaker, S. Strempel…·M. Spiliotis
This study identifies 28 dysregulated hepatic miRNAs in C57BL/6 mice infected with Echinococcus multilocularis eggs, showing downregulation of miRNAs involved in angiogenesis and fatty acid biosynthesis.
DOI 10.1371/journal.pntd.0007640 - MicrobiologybioRxiv
Calorie restriction intervention induces enterotype-associated BMI loss in nonobese individuals
H. Zou, D. Wang, H. Ren…·H. Zhong
This study shows that calorie restriction leads to BMI loss in nonobese individuals, with variations linked to gut microbiota enterotypes.
DOI 10.3390/nu12030631 - ImmunologybioRxiv
An atlas of infiltrated B-lymphocytes in breast cancer revealed by paired single-cell RNA-sequencing and antigen receptor profiling
q. hu, y. hong, p. qi…·y. zhang
This study identifies a comprehensive atlas of B-lymphocytes in triple-negative breast cancer using single-cell RNA-sequencing and antigen receptor profiling, revealing their mature characteristics and prognostic significance.
- ImmunologybioRxivPreprint
A Single-Cell Immune Atlas of Triple Negative Breast Cancer Reveals Novel Immune Cell Subsets
S. Qiu, R. Hong, Z. Zhuang…·S. Wang
The paper performs single-cell RNA sequencing on TNBC tumors to identify novel immune cell subsets and their associations with survival and TCR signaling.
- EcologybioRxiv
Regulating Soil Bacterial Diversity, Enzyme Activities and Community Composition Using Residues from Golden Apple Snails
J. Wang, X. Lu, J. Zhang…·Y. Xiong
This study evaluates how golden apple snail residues affect soil properties and bacterial communities, finding that they increase soil nutrients and alter bacterial diversity and composition.
DOI 10.1038/s41598-020-73184-z - ImmunologybioRxivPreprint
The C-terminal non-catalytic domain of Mkp-1 phosphatase harbors a complex signal for rapid proteasome degradation in enterocytes
J. Wang, A. V. Grishin, P. Delaplain…·H. R. Ford
This study identifies the C-terminal non-catalytic domain of Mkp-1 as containing multiple elements that mediate its rapid proteasome-dependent degradation in enterocytes, independent of ERK phosphorylation.
DOI 10.1101/677369 - EcologyPLOS BiologyPeer-reviewed
Neutrality in the Metaorganism
M. Sieber, L. Pita, N. Weiland-Bräuer…·A. Traulsen
This study shows that microbiota community structure across various host organisms aligns with neutral model predictions, suggesting neutral processes rather than host selection primarily shape microbial communities after colonization.
- Cancer BiologybioRxivPreprint
CRISPR-assisted targeted enrichment-sequencing (CATE-seq)
X. Xu, Q. Xia, S. Zhang…·J. Wang
This paper introduces CATE-seq, a CRISPR-based targeted sequencing method that outperforms hybridization-based techniques in simplicity, specificity, sensitivity, throughput, and scalability.
DOI 10.1101/672816 - Cell BiologybioRxiv
Quantifying murine placental extracellular vesiclesacross gestation and in preterm birth data withtidyNano: A computational framework for analyzingand visualizing nanoparticle data in R
S. L. Nguyen, J. W. Greenberg, H. Wang…·M. G. Petroff
The paper introduces tidyNano, an R package for analyzing nanoparticle data, and applies it to study murine placental extracellular vesicles across gestation and preterm birth.
DOI 10.1371/journal.pone.0218270 - EcologybioRxiv
SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes
Y. Ji, T. Huotari, T. Roslin…·O. Ovaskainen
SPIKEPIPE accurately quantifies eukaryotic species abundances using DNA barcodes or mitogenomes with high accuracy and repeatability across environmental samples.
DOI 10.1111/1755-0998.13057 - MicrobiologybioRxiv
Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics
H. Zhong, H. Ren, Y. Lu…·J. Li
The paper compares gut metagenomics and metaproteomics in prediabetics and treatment-naïve type 2 diabetics to identify host-microbial interplays across disease stages.
DOI 10.1016/j.ebiom.2019.08.048 - Cancer BiologybioRxivPreprint
Gene Panel Sequencing in a Chinese High-risk Breast Cancer Cohort
X. Zhang, X. Wang, B. Song…·D. Pang
The paper analyzes gene panel sequencing data from 829 Chinese high-risk breast cancer patients to identify pathogenic variants and variants of uncertain significance across 115 hereditary cancer susceptibility genes.
DOI 10.1101/513317 - Cell BiologybioRxiv
Intracellular XBP1-IL-24 axis dismantles cytotoxic unfolded protein response in the liver
J. Wang, B. Hu, Z. Zhao…·Q. Xia
The paper identifies IL-24 as an anti-apoptotic factor in liver ER stress, showing its role in preventing cell death and its clinical relevance in acute liver failure.
- BiophysicsNature CommunicationsPeer-reviewed
Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution
X. Fan, J. Wang, X. Zhang…·H.-W. Wang
This study uses single particle cryo-EM to determine the structure of 52 kDa streptavidin at 3.2 Angstrom resolution, demonstrating the feasibility of high-resolution imaging for small molecules.
DOI 10.1038/s41467-019-10368-w - Cancer BiologybioRxivPreprint
HER2 Cancer Protrusion Growth Signaling Regulated by Unhindered, Localized Filopodial Dynamics
W. Y. Lam, Y. Wang, B. Mostofian…·T. Q. Vu
This study investigates how HER2 dynamics in filopodia regulate protrusion growth and signaling in breast cancer cells, revealing distinct motion patterns and functional roles in protrusion-based signaling.
- MicrobiologybioRxivPreprint
Effects of Five Products on Gut Microbiota and Short-Chain Fatty Acids of Obese Rats
This study evaluates the effects of five products on gut microbiota and short-chain fatty acids in obese rats, finding that some products increase microbial diversity and SCFA levels.
DOI 10.1101/652495 - Cancer BiologybioRxiv
Detection of Ovarian Cancer Using Cells Sourced from a Local Microenvironment
M. M. Galey, A. N. Young, V. Z. Petukhova…·L. M. Sanchez
The paper presents a MALDI-TOF MS method to detect ovarian cancer progression using vaginal fluid samples from tumor-bearing mice.
DOI 10.1021/acs.jproteome.9b00694 - Cell BiologybioRxivPreprint
Global analysis of epigenetic heterogeneity identifies divergent drivers of esophageal squamous cell carcinoma
W. CAO, H. Lee, W. Wu…·T. G. Bivona
The paper identifies epigenetic drivers of esophageal squamous cell carcinoma through multi-omics analysis, revealing hypomethylation patterns and non-canonical WNT signaling activation.
DOI 10.1101/641357 - Cancer BiologybioRxivPreprint
The Salt-Inducible Kinase inhibitor YKL-05-099 suppresses MEF2C function and acute myeloid leukemia progression in vivo
Y. Tarumoto, S. Lin, J. Wang…·C. Vakoc
This study shows that the SIK3 inhibitor YKL-05-099 suppresses MEF2C function and slows AML progression in mouse models.
DOI 10.1101/636969 - MicrobiologybioRxiv
Entecavir resistance mutations rtL180M/T184L/M204V combined with rtA200V lead to tenofovir resistance
D. Jiang, J. Wang, X. Zhao…·X. Wang
The paper reports a quadruple mutant of hepatitis B virus showing moderate resistance to tenofovir and demonstrates that combination therapy with entecavir and tenofovir effectively suppresses this resistant mutant.
DOI 10.1111/liv.14241 - Cancer BiologybioRxivPreprint
Dysregulated Alternative Splicing Landscape Identifies Intron Retention as a Hallmark and Spliceosome as a Therapeutic Vulnerability in Aggressive Prostate Cancer
D. Zhang, Q. Hu, Y. Ji…·D. G. Tang
The paper identifies intron retention as a hallmark of aggressive prostate cancer and highlights the spliceosome as a therapeutic target by analyzing splicing dysregulation across prostate cancer progression.
DOI 10.1101/634402 - MicrobiologybioRxivPreprint
Base editing in Streptomyces with Cas9-deaminase fusions
Z. Zhong, J. Guo, L. Deng…·Y. Sun
This study adapts base editors to Streptomyces, achieving high-efficiency genome editing without DNA double-strand breaks.
DOI 10.1101/630137 - Plant BiologybioRxiv
Comparative analysis of the Accelerated Aged seed transcriptome profiles of maize CSSLs (I178 and X178)
The paper compares transcriptome profiles of maize CSSLs I178 and X178 under accelerated ageing to identify genes and alternative splicing events associated with seed longevity.
DOI 10.1371/journal.pone.0216977 - MicrobiologybioRxiv
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment
J. Li, H. Zhong, Y. Ramayo-Caldas…·D. P. Morgavi
The paper creates a gene catalog of bovine rumen microbes, revealing high diversity and function in plant biomass degradation and methane production.
DOI 10.1093/gigascience/giaa057 - MicrobiologybioRxiv
Effects of artificially introduced Enterococcus faecalis strains in experimental necrotizing enterocolitis
A. V. Grishin, P. T. Delaplain, B. A. Bell…·H. R. Ford
This study introduces E. faecalis strains into neonatal rats and finds that some strains increase necrotizing enterocolitis pathology.
DOI 10.1371/journal.pone.0216762 - PathologybioRxiv
Phanerochaete chrysosporium strain B-22, a parasitic fungus infecting Meloidogyne incognita
B. Du, Y. Xu, H. Dong…·J. wang
This study characterizes the parasitic effect of Phanerochaete chrysosporium strain B-22 on Meloidogyne incognita life stages and demonstrates its efficacy as a biocontrol agent for tomato plants.
DOI 10.1371/journal.pone.0216688 - ImmunologybioRxivPreprint
TCR repertoire analysis reveals effector memory T cells differentiation into Th17 cells in rheumatoid arthritis
X. Jiang, S.-y. Wang, C. Zhou…·X. Zhang
This study analyzes TCR repertoires in RA patients and identifies clonal expansion and shared repertoires between EMT and Th17 cells, correlating TCR diversity with disease activity.
DOI 10.1101/616441 - ImmunologybioRxiv
Structure of human cytomegalovirus UL144, an HVEM orthologue, bound to the B and T cell Lymphocyte Attenuator
A. Bitra, I. Nemcovicova, G. Picarda…·D. M. Zajonc
This paper reports the crystal structure of the HCMV UL144/BTLA complex, revealing molecular mechanisms of selective BTLA binding and informing the design of BTLA agonists.
DOI 10.1074/jbc.ra119.009199