Author
A. De Simone
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2018-2022 · peak 2/yrCo-Author Collaboration Network
10 top collaborators · 12 mutual co-author links7 papers
Recent·Most cited
A Kink in DWORF Helical Structure Controls the Activation of the Sarco-plasmic Reticulum Ca2+-ATPase
V. U. Reddy, D. K. Weber, S. Wang, E. K. Larsen, T. Gopinath, A. De Simone, S. L. Robia, G. Veglia
This study determines the structure of DWORF and shows that a kink caused by Pro15 enables its unique activation of SERCA.
bioRxiv · May 5, 2021Biophysics
Small molecule sequestration of amyloid-β as a drug discovery strategy for Alzheimer's disease
G. T. Heller, F. A. Aprile, T. C. Michaels, R. Limbocker, M. Perni, F. S. Ruggeri, B. Mannini, T. Lohr, M. Bonomi, C. Camilloni, A. De Simone, I. C. Felli, R. Pierattelli, T. P. Knowles, C. M. Dobson, M. Vendruscolo
This paper identifies a small molecule that binds and sequesters monomeric amyloid-β, inhibiting its aggregation and rescuing toxicity in a C. elegans model.
bioRxiv · Sep 16, 2020Biophysics
Structural Basis for Allosteric Control of the SERCA-Phospholamban Membrane Complex by Ca2+ and cAMP-dependent Phosphorylation
D. K. Weber, M. S. Hernandez, V. U. Reddy, S. Wang, E. K. Larsen, G. Tata, M. Gustavsson, R. L. Cornea, D. D. Thomas, A. De Simone, G. Veglia
This study reveals how phosphorylation and Ca2+ modulate the SERCA-PLN complex through structural changes that enhance Ca2+ transport.
bioRxiv · Aug 28, 2020 · PreprintBiophysics
Dynamic design: manipulation of millisecond timescale motions on the energy landscape of Cyclophilin A
J. Juarez-Jimenez, A. A. Gupta, G. Karunanithy, A. Mey, C. Georgiou, C. Ioannidis, A. De Simone, P. N. Barlow, A. N. Hulme, M. D. Walkinshaw, A. J. Baldwin, J. Michel
The paper uses accelerated MD and MSM to study millisecond timescale conformational dynamics of CypA, identifying key states and validating predictions with NMR.
bioRxiv · Sep 17, 2019Biophysics
Extent of N-terminus exposure by altered long-range interactions of monomeric alpha-synuclein determines its aggregation propensity
A. D. Stephens, M. Zacharopoulou, R. Moons, G. Fusco, N. Seetaloo, A. Chiki, P. J. Hooper, I. Mela, H. A. Lashuel, J. J. Philips, A. De Simone, F. D. Sobott, G. S. Kaminski Schierle
This study investigates how calcium-induced conformational changes in monomeric alpha-synuclein affect N-terminus exposure and aggregation propensity, identifying sequence-specific conformational differences as key factors.
bioRxiv · Aug 20, 2019 · PreprintBiophysics
Developing NMR methods for macromolecular machines: Measurement of residual dipolar couplings to probe dynamic regions of the ribosome
X. Wang, J. P. Kirkpatrick, H. M. M. Launay, A. de Simone, D. Häussinger, C. M. Dobson, M. Vendruscolo, L. D. Cabrita, C. Waudby, J. Christodoulou
This paper develops NMR methods to measure residual dipolar couplings in the ribosome's dynamic regions, refining structural models and validating them with experimental data.
bioRxiv · Jul 12, 2018 · PreprintBiophysics