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Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
15 papers
Recent·Most cited
S. Tsujino, S. Deguchi, T. Nomai, M. Padilla-Blanco, A. Plianchaisuk, L. Wang, M. M. Begum, K. Uriu, K. Mizuma, N. Nao, I. Kojima, T. Tsubo, J. Li, Y. Matsumura, M. Nagao, , Za
The paper investigates the virological features of the SARS-CoV-2 EG.5.1 variant, finding its fitness and antiviral sensitivity comparable to XBB.1.5, with structural differences in spike proteins.
bioRxiv · Oct 19, 2023Microbiology
Y.-C. Chuang, N. W. Haas, R. Pepin, M. Behringer, Y. Oda, B. LaSarre, C. S. Harwood, J. B. McKinlay
The paper identifies adenine as a cross-fed metabolite between Rhodopseudomonas palustris and E. coli, revealing a purine salvage bottleneck mechanism.
bioRxiv · Oct 17, 2023 · PreprintMicrobiology
T. Tamura, H. Ito, S. Torii, L. Wang, S. Tsujino, A. Kamiyama, Y. Oda, Y. Morioka, S. Suzuki, K. Shirakawa, K. Sato, K. Yoshimatsu, Y. Matsuura, S. Iwano, S. Tanaka, T. Fukuhara
This study introduces AkaBLI, a method using Akaluc bioluminescence to track SARS-CoV-2 infection in vivo with higher sensitivity than NanoLuc, showing its utility in monitoring viral dynamics and vaccine efficacy.
bioRxiv · Oct 12, 2023 · PreprintMicrobiology
T. Tamura, T. Irie, S. Deguchi, H. Yajima, M. Tsuda, H. Nasser, K. Mizuma, A. Plianchaisuk, S. Suzuki, K. Uriu, M. M. Begum, R. Shimizu, M. Jonathan, R. Suzuki, T. Kondo, , T. Fukuhara
The paper analyzes the virological characteristics of the SARS-CoV-2 XBB.1.5 variant, showing reduced pathogenicity and impaired MHC expression due to mutations in ORF8 and S.
bioRxiv · Aug 16, 2023 · PreprintMicrobiology
C. Ono, S. Tanaka, K. Myouzen, T. Iwasaki, M. Ueda, Y. Oda, K. Yamamoto, Y. Kochi, Y. Baba
This study shows that upregulated Fcrl5 disrupts B cell anergy, leading to autoimmunity by activating autoreactive B cells and exacerbating autoimmune disease models.
bioRxiv · Jul 20, 2023 · PreprintImmunology
J. O. Kroll, E. M. Van Fossen, L. N. Anderson, A. D. McNaughton, D. Herrera, Y. Oda, A. J. Wilson, W. C. Nelson, N. Kumar, A. R. Frank, J. R. Elmore, P. Handakumbura, V. S. Lin, R. G. Egbert
This paper uses a sorgoleone-based photoaffinity probe to identify proteins in Acinetobacter pittii that bind sorgoleone, revealing potential pathways for microbial interaction with this plant metabolite.
bioRxiv · May 31, 2023Biochemistry
Y. Oda, J. R. Elmore, W. C. Nelson, A. Wilson, Y. Farris, R. Shrestha, C. F. Garcia, D. Pettinga, A. J. Ogden, H. Baldino, W. G. Alexander, A. Deutschbauer, C. V. Hurtado, J. E. McDermott, A. M. Guss, , R. Egbert
The paper identifies bacterial strains capable of degrading sorgoleone, a plant exudate, and characterizes the genetic basis for this trait, offering potential for engineering beneficial plant-microbe interactions.
bioRxiv · May 26, 2023 · PreprintMicrobiology
T. Tamura, J. Ito, K. Uriu, J. Zahradnik, I. Kida, H. Nasser, M. Shofa, Y. Oda, S. Lytras, N. Nao, Y. Itakura, S. Deguchi, R. Suzuki, L. Wang, M. M. Begum, , K. Sato
This study identifies XBB as a SARS-CoV-2 variant resulting from recombination of BA.2 subvariants, showing increased resistance to neutralizing antibodies and enhanced fusogenicity compared to BA.2.75.
bioRxiv · Dec 27, 2022 · PreprintMicrobiology
J. Ito, R. Suzuki, K. Uriu, Y. Itakura, J. Zahradnik, S. Deguchi, L. Wang, S. Lytras, T. Tamura, I. Kida, H. Nasser, M. Shofa, M. M. Begum, M. Tsuda, Y. Oda, , K. Sato
The paper investigates convergent evolution in SARS-CoV-2 Omicron subvariants, identifying five critical spike protein substitutions in BQ.1.1 that enhance viral fitness and antibody resistance.
bioRxiv · Dec 5, 2022Microbiology
Z. WANG, A. Numada, Y. Oda, F. Wagai, M. Ohgushi, K. Maki, T. Adachi, M. Eiraku
The paper introduces a photocurable hydrogel that allows spatial control of stiffness to direct human pluripotent stem cell differentiation and pattern formation.
bioRxiv · Oct 2, 2022Bioengineering
T. Tamura, D. Yamasoba, Y. Oda, J. Ito, T. Kamasaki, N. Nao, R. Hashimoto, Y. Fujioka, R. Suzuki, L. Wang, H. Ito, I. Kimura, I. Yokota, M. Kishimoto, M. Tsuda, , T. Fukuhara
This study compares the pathogenicity of SARS-CoV-2 Omicron subvariants BA.1, BA.2, and BA.5, finding BA.5 is more fusogenic and induces stronger inflammation than earlier variants.
bioRxiv · Aug 5, 2022Microbiology
A. Saito, T. Tamura, J. Zahradnik, S. Deguchi, K. Tabata, I. Kimura, J. Ito, H. Nasser, M. Toyoda, K. Nagata, K. Uriu, Y. Kosugi, S. Fujita, D. Yamasoba, M. Shofa, , Kei Sato
This study investigates the virological characteristics of SARS-CoV-2 Omicron BA.2.75, finding it has higher transmissibility and pathogenicity compared to BA.2 and BA.5, but similar sensitivity to antiviral drugs.
bioRxiv · Jul 14, 2022Microbiology
I. Kimura, D. Yamasoba, T. Tamura, N. Nao, Y. Oda, S. Mitoma, J. Ito, H. Nasser, J. Zahradnik, K. Uriu, S. Fujita, Y. Kosugi, L. Wang, M. Tsuda, M. Kishimoto, , K. Sato
This study analyzes the virological characteristics of SARS-CoV-2 Omicron variants BA.2.12.1, BA.4, and BA.5, finding they have higher reproduction numbers, reduced neutralization by prior immunity, increased replication in lung cells, and greater pathogenicity in hamsters compared to BA.2.
bioRxiv · May 26, 2022Microbiology
D. Yamasoba, I. Kimura, H. Nasser, Y. Morioka, N. Nao, J. Ito, K. Uriu, M. Tsuda, J. Zahradnik, K. Shirakawa, R. Suzuki, M. Kishimoto, Y. Kosugi, K. Kobiyama, T. Hara, , Sawa
This study compares the virological characteristics of SARS-CoV-2 BA.2 and BA.1 variants, finding BA.2 has higher transmissibility, different antigenicity, greater replicative capacity, and higher pathogenicity in hamsters.
bioRxiv · Feb 14, 2022Microbiology
Y. Oda, M. M. Shapiro, N. M. Lewis, X. Zhong, H. K. Huse, W. Zhong, J. E. Bruce, C. Manoil, C. S. Harwood
This study identifies CsrA-controlled proteins in A. baumannii that contribute to desiccation tolerance, revealing novel mechanisms involving proteins of unknown function and intrinsically disordered proteins.
bioRxiv · Aug 11, 2021Microbiology