Author
J. Liu
Cincinnati Children's Hospital Medical CenterPrimary ORCID profile (0009-0003-8138-093X · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2021-2021 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 15 mutual co-author links555 papers
Recent·Most cited
- Cancer BiologybioRxivPreprintDOI 10.1101/728410
- Plant BiologybioRxivPreprint
A genotype independent DMP-HI system in dicot crops
Y. Zhong, B. Chen, D. Wang…·S. Chen
This paper demonstrates a genotype-independent in vivo haploid induction system in dicot crops by mutating DMP genes, achieving HI rates of 1.9%, 2.4%, and 1.2% in tomato, rapeseed, and tobacco respectively.
DOI 10.1101/2021.06.21.449224 - BiochemistrybioRxivPreprint
A self-immolative linker for heparanase activatable probe
K. A. Schleyer, J. Liu, Z. Wang, L. Cui
This paper introduces a self-immolative linker that restores activity to an inactive heparanase probe, enabling facile development of activatable imaging probes.
DOI 10.1101/2021.06.15.448502 - MicrobiologybioRxiv
Protective efficacy of rhesus adenovirus COVID-19 vaccines against mouse-adapted SARS-CoV-2
L. Tostanoski, L. Gralinski, D. Martinez…·D. H. Barouch
This study evaluates the protective efficacy of rhesus adenovirus serotype 52 vaccines against a mouse-adapted SARS-CoV-2 strain, showing robust antibody responses and protection against viral replication and disease.
DOI 10.1128/jvi.00974-21 - BiochemistrybioRxivPreprint
A Versatile Linker for Probes Targeting Hydrolases via In Situ labeling
J. Liu, Z. Chen, C. Cui…·L. Cui
This study develops a versatile linker chemistry for in situ labeling of hydrolase-targeting probes using quinone methide species, showing improved labeling efficiency in living cells.
DOI 10.1101/2021.06.14.448363 - BiochemistrybioRxivPreprint
Targeting a proteolytic neo-epitope of CUB-domain containing protein 1 in RAS-driven cancer
S. A. Lim, J. Zhou, A. J. Martinko…·J. A. Wells
The paper develops antibodies targeting proteolytic neo-epitopes of CDCP1 in RAS-driven cancers, showing improved tumor specificity and safety.
DOI 10.1101/2021.06.14.448427 - BioengineeringbioRxiv
Temperature-Inducible Precision Guided Sterile Insect Technique
N. P. Kandul, J. Liu, O. Akbari
This paper introduces a temperature-inducible pgSIT method in Drosophila that eliminates the need for genetic crosses and sex sorting to produce sterile males for population control.
DOI 10.1089/crispr.2021.0077 - BioengineeringbioRxiv
Cyclic Microchip Assay for Measurement of Hundreds of Functional Proteins in Single Neurons
L. Yang, A. Ball, J. Liu…·J. Wang
The paper introduces a single-cell cyclic multiplex in situ tagging (CycMIST) technology to comprehensively profile functional proteins in single neurons, demonstrating its ability to detect 182 proteins in a neuron cell line and reveal differential expression in an Alzheimer's disease model.
DOI 10.1038/s41467-022-31336-x - MicrobiologyFrontiers in Cellular and Infection MicrobiologyPeer-reviewed
Composition and Biophysical Properties of the Sorting Platform Pods in the Shigella Type III Secretion System
S. Tachiyama, R. Skaar, Y. Chang…·W. D. Picking
The paper investigates the composition and biophysical properties of the Spa33 heterotrimers in the Shigella T3SS sorting platform, proposing a model for their structure and function.
DOI 10.3389/fcimb.2021.682635 - BioengineeringNature MethodsPeer-reviewed
Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes
J. Chen, H. Sasaki, H. Lai…·H. Shroff
This paper applies RCAN to enhance fluorescence microscopy image volumes, achieving denoising and resolution improvements across multiple microscopy techniques.
DOI 10.1038/s41592-021-01155-x - MicrobiologybioRxiv
Correlation of vaccine-elicited antibody levels and neutralizing activities against SARS-CoV-2 and its variants
J. Liu, B. H. Bodnar, X. Wang…·W.-Z. Ho
This study examines the correlation between vaccine-induced IgG levels and neutralizing titers against SARS-CoV-2 and its variants, finding a significant positive correlation and reduced neutralization against variants.
DOI 10.1002/ctm2.644 - Cancer BiologybioRxiv
Profiling tumor immune microenvironment of non-small cell lung cancer using multiplex immunofluorescence
H. Peng, X. Wu, R. Zhong…·W. Liang
This study profiles the tumor immune microenvironment of NSCLC using multiplex immunofluorescence, identifying three immune subtypes and an immune-related risk score for prognosis prediction.
- Pharmacology & ToxicologybioRxiv
Urinary Metabolomics from a Dose-Fractionated Polymyxin B Rat Model of Acute Kidney Injury
E. Locci, J. Liu, G. Pais…·M. H. Scheetz
This study uses urinary metabolomics in a rat model to show that taurine levels increase on day 1 of polymyxin B treatment and correlate with kidney injury markers.
DOI 10.1016/j.ijantimicag.2022.106593 - MicrobiologyProceedings of the National Academy of SciencesPeer-reviewed
The ORF8 Protein of SARS-CoV-2 Mediates Immune Evasion through Potently Downregulating MHC-I
Y. Zhang, J. Zhang, Y. Chen…·H. Zhang
This study identifies SARS-CoV-2 ORF8 as a protein that downregulates MHC-I to evade immune detection by promoting lysosomal degradation, reducing CTL-mediated cell elimination.
DOI 10.1073/pnas.2024202118 - BioengineeringbioRxivPreprint
Multiview super-resolution microscopy
Y. Wu, X. Han, Y. Su…·H. Shroff
This paper introduces a multiview super-resolution microscopy approach that enhances confocal microscopy resolution and reduces phototoxicity across multiple scales.
DOI 10.1101/2021.05.21.445200 - BiochemistrybioRxivPreprint
The Unconventional Self-Cleavage of Selenoprotein K
R. Cheng, J. Liu, M. Forstner…·S. Rozovsky
This paper identifies selenok's self-cleavage activity and its specific interaction sites, suggesting a regulatory role in its protein interactions and cellular functions.
DOI 10.1101/2021.05.15.444318 - Evolutionary BiologybioRxiv
Fitness effects of CRISPR endonucleases in Drosophila melanogaster populations
A. M. Langmüller, J. Champer, S. Lapinska…·P. W. Messer
This study evaluates fitness costs of CRISPR/Cas9 in Drosophila by tracking allele frequencies of transgenic constructs, finding moderate off-target costs but no direct Cas9 costs, with Cas9HF1 minimizing off-target effects.
DOI 10.7554/elife.71809 - Plant BiologybioRxiv
ABA homeostasis and long-distance translocation is redundantly regulated by ABCG ABA importers
Y. Zhang, H. Vasuki, J. Liu…·E. Shani
This study identifies ABCG17 and ABCG18 as ABA importers that redundantly regulate ABA homeostasis and translocation in Arabidopsis, affecting stomatal closure and root development.
DOI 10.1126/sciadv.abf6069 - Cancer BiologybioRxiv
NMNAT promotes glioma growth through regulating post-translational modifications of p53 to inhibit apoptosis
DOI 10.7554/elife.70046 - ImmunologybioRxiv
Preclinical evaluation of a SARS-CoV-2 mRNA vaccine PTX-COVID19-B
J. Liu, P. Budylowski, R. Samson…·M. A. Ostrowski
This paper evaluates a SARS-CoV-2 mRNA vaccine, PTX-COVID19-B, showing it is safe, effective, and induces strong immune responses in mice and hamsters, with ongoing human clinical trials.
- BioengineeringbioRxiv
General Finite-Element Framework of the Virtual Fields Method in Nonlinear Elasticity
Y. Mei, J. Liu, X. Guo…·S. Avril
This paper introduces a general finite-element framework for the Virtual Fields Method to identify constitutive parameters in nonlinear elasticity using measured deformation fields.
DOI 10.1007/s10659-021-09842-8 - Cancer BiologybioRxiv
Loss of Smad4 promotes aggressive lung cancer metastasis by de-repression ofPAK3 via miRNA regulation
This study shows that Smad4 loss promotes lung cancer metastasis by upregulating PAK3 through miRNA regulation, suggesting Smad4 LOF as a prognostic marker and therapeutic target.
DOI 10.1038/s41467-021-24898-9 - MicrobiologybioRxivPreprint
Aerosol Exposure of Cynomolgus Macaques to SARS-CoV-2 Results in More Severe Pathology than Existing Models
S. L. Bixler, C. P. Stefan, A. Jay…·M. L. M. Pitt
This study compares aerosol and intranasal SARS-CoV-2 exposure in macaques, finding aerosol exposure in cynomolgus macaques causes more severe disease than other models.
DOI 10.1101/2021.04.27.441510 - Pharmacology & ToxicologybioRxiv
Of Rats and Men, a Translational Model to Understand Vancomycin Pharmacokinetic/Toxicodynamic relationships
M. H. Scheetz, G. Pais, T. Lodise…·T. Holland
The paper links vancomycin toxicity data from a rat model to two human clinical studies, showing rats are more sensitive to kidney injury at therapeutic concentrations.
DOI 10.1128/aac.01060-21 - BiophysicsbioRxiv
High efficiency excitation energy transfer in biohybrid quantum dot-bacterial reaction center nanoconjugates
G. Amoruso, J. Liu, D. W. Polak…·T. Oliver
The paper measures efficient Forster resonance energy transfer from quantum dots to bacterial reaction centers in nanoconjugates, showing a 26.6 ns time scale and 0.75 efficiency.
DOI 10.1021/acs.jpclett.1c01407 - Plant BiologybioRxivPreprint
Effects of straw returning with potassium fertilizer on the stem lodging resistance, grain quality and yield of spring maize (Zea mays L.)
Y. Fan, J.-l. Gao, J.-y. Sun…·X. Yu
This study examines how combining straw returning with potassium fertilizer affects spring maize's lodging resistance, grain quality, and yield in Inner Mongolia.
DOI 10.1101/2021.04.19.440424 - BiochemistrybioRxivPreprint
Precision Genome and Base Editing by Regulating mRNA Nuclear Export Using Selective Inhibitors of Nuclear Export
Y. Cui, S. Wang, T. Ma…·J. Liu
This study identifies SINEs as inhibitors of CRISPR-Cas9 activity by blocking Cas9 mRNA nuclear export, enhancing genome and base editing specificity in human cells.
DOI 10.1101/2021.04.17.440169 - BiophysicsbioRxiv
Cryptic pathogen-sugar interactions revealed by universal saturation transfer analysis
C. J. Buchanan, B. Gaunt, P. J. Harrison…·B. G. Davis
This paper introduces uSTA, an NMR method to analyze protein-ligand interactions, revealing SARS-CoV-2 spike binds sialoside sugars via the NTD and showing variants-of-concern lose this binding.
DOI 10.1126/science.abm3125 - MicrobiologybioRxiv
Intranasal HD-Ad Vaccine Protects the Upper and Lower Respiratory Tracts of hACE2 Mice against SARS-CoV-2
DOI 10.1186/s13578-021-00723-0 - Plant BiologybioRxivPreprint
Effects of potassium fertilizer on dry matter accumulation and potassium absorption characteristics of maize (Zea mays L.) inbred lines with different yield types
Y. Fan, J.-l. Gao, J.-y. Sun…·X.-f. Yu
This study examines how potassium fertilizer affects dry matter accumulation and potassium absorption in maize inbred lines with different yield types over three years.
DOI 10.1101/2021.04.06.438571