Author
X. Liu
University of South Florida
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2021-2022 · peak 18/yrCo-Author Collaboration Network
10 top collaborators · 18 mutual co-author links497 papers
Recent·Most cited
- PhysiologybioRxivPreprintDOI 10.1101/2022.02.19.481116
- MicrobiologybioRxivPreprint
Hinokitiol alters Gene Expression in Aspergillus fumigatus, protects against fungal keratitis by Reducing Fungal Load, LOX-1, Proinflammatory cytokines and Neutrophil Infiltration
S. Ma, H. Lin, X. Peng…·J. Lin
This paper shows that Hinokitiol reduces fungal load and inflammation in Aspergillus fumigatus keratitis by altering gene expression and inhibiting fungal growth.
DOI 10.1101/2022.02.18.480984 - ImmunologybioRxivPreprint
Potent Neutralization of Omicron and other SARS-CoV-2 Variants of Concern by Biparatopic Human VH Domains
C. Chen, J. W. Saville, M. M. Marti…·W. Li
This study identifies a biparatopic VH domain that neutralizes SARS-CoV-2 VOCs, including Omicron, with high potency in vitro and in a mouse model.
- Cancer BiologybioRxivPreprint
Comprehensive dissection of immune microenvironment in the progression of early gastric cancer at spatial and single-cell resolution
This study uses spatial transcriptomics and single-cell RNA-seq to analyze immune microenvironment changes in gastric cancer progression, identifying immune cell dysregulation and key signaling pathways.
DOI 10.1101/2022.02.16.480776 - BiophysicsbioRxiv
Super-resolution analyzing spatial organization of lysosomes with an organic fluorescent probe
L. Wang, R. Chen, G. Han…·Y. Sun
The paper uses super-resolution microscopy and a fluorescent probe to analyze lysosome spatial organization relative to mitochondria, revealing changes in distance distribution patterns during autophagy and linking lysosome positioning to mitochondrial health.
DOI 10.1002/exp.20210215 - ImmunologybioRxivPreprint
Staphylococcus aureus nt5 gene contributes to bacterial infection ability to form kidney abscess
Y. Ye, X. Liu, Z. Xia…·S. Liang
This study shows that silencing the nt5 gene in Staphylococcus aureus reduces kidney abscess formation and enhances phagocytosis by host immune cells.
DOI 10.1101/2022.02.09.479838 - MicrobiologySignal Transduction and Targeted TherapyPeer-reviewed
An ultrapotent RBD-targeted biparatopic nanobody neutralizes broad SARS-CoV-2 variants
X. Chi, X. Zhang, S. Pan…·W. Yang
This paper develops a biparatopic nanobody with broad neutralization against multiple SARS-CoV-2 variants, including Omicron, showing strong affinity and activity.
DOI 10.1038/s41392-022-00912-4 - BiochemistrybioRxivPreprint
Structural features of mTORC2 that control substrate-specific activities.
Z. Yu, J. Chen, E. Takagi…·D. Pearce
The paper determines the structure of mTORC2 and shows how substrate-specific interactions and conformational changes regulate its activity.
DOI 10.1101/2022.02.03.478898 - Cell BiologybioRxivPreprint
Beyond G1/S regulation: How cell size homeostasis is tightly controlled throughout the cell cycle?
X. Liu, J. Yan, M. W. Kirschner
This study shows cell mass homeostasis is maintained throughout the cell cycle, not just at G1/S, using ceQPM to measure dry mass in mammalian cells.
- BiochemistrybioRxiv
A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA
X. Liu, C. Gaubitz, J. Pajak, B. A. Kelch
This paper identifies a second DNA binding site in yeast RFC that facilitates clamp loading at nicked or gapped DNA, enhancing DNA repair processes.
DOI 10.7554/elife.77483 - Evolutionary BiologybioRxivPreprint
Single-nuclei transcriptomics of dog hippocampus reveals the distinct cellular mechanism of domestication
Q.-J. Zhou, X. Liu, L. Zhang…·G.-D. Wang
This study uses single-nuclei transcriptomics to analyze dog hippocampus cell types and identifies convergence between differentially expressed genes and putative positively selected genes related to nervous system development.
DOI 10.1101/2022.01.29.478120 - Plant BiologybioRxivPreprint
The Hyaloperanospora arabidopsidis effector HaRxL77 is hypermobile between cells and manipulates host defence
X. Liu, A. Bellandi, M. G. Johnston, C. Faulkner
This study identifies HaRxL77, an effector from the plant pathogen Hpa, as hypermobile between cells and manipulates host defence by modifying plasmodesmata permeability and suppressing ROS bursts.
DOI 10.1101/2022.01.24.477405 - Pharmacology & ToxicologybioRxivPreprint
The relaxin receptor RXFP1 signals through a mechanism of autoinhibition
S. C. Erlandson, S. Rawson, J. Osei-Owusu…·A. C. Kruse
This study determines the cryo-EM structure of active-state RXFP1 bound to relaxin-2 and Gs protein, revealing an autoinhibition mechanism.
- Cancer BiologybioRxiv
Piperlongumine (PL) conjugates induce targeted protein degradation
J. Pei, Y. Xiao, X. Liu…·D. Lv
The paper identifies piperlongumine as a covalent E3 ligase recruiter that, when conjugated with CDK9 inhibitors, induces targeted protein degradation of CDK9 and EML4-ALK fusion oncoprotein.
DOI 10.1016/j.chembiol.2023.01.004 - Plant BiologybioRxivPreprint
Chromatin reprogramming and transcriptional regulation orchestrate embryogenesis in hexaploid wheat
L. Zhao, X. Lin, Y. Yang…·J. Xiao
This study maps chromatin reprogramming and transcriptional regulation during hexaploid wheat embryogenesis, revealing epigenetic mechanisms governing cell fate and organogenesis.
DOI 10.1101/2022.01.21.477188 - BiochemistrybioRxiv
Spatially resolved profiling of protein conformation and interactions by biocompatible chemical cross-linking in living cells
L. Zhao, Q. Zhao, Y. An…·Y. Zhang
This paper introduces SPACX, a method to profile protein conformation and interactions in living cells, revealing subcellular-specific heterogeneity and functional differences in PTEN.
DOI 10.1038/s41467-024-52558-1 - Plant BiologybioRxivPreprint
The role of LHCBM1 in non-photochemical quenching in Chlamydomonas reinhardtii
X. Liu, W. J. Nawrocki, R. Croce
This study investigates the role of LHCBM1 in NPQ in Chlamydomonas reinhardtii, showing that its absence reduces NPQ despite normal LHCSR3 expression and pH response.
DOI 10.1101/2022.01.13.476201 - BiochemistrybioRxiv
Biochemical characterization of actin assembly mechanisms with ALS-associated profilin variants
X. Liu, M. L. Pimm, B. Haarer…·J. L. Henty-Ridilla
This study investigates how ALS-associated profilin variants affect actin assembly through biochemical assays and finds that some variants impair actin elongation when formin is present.
DOI 10.1016/j.ejcb.2022.151212 - PhysiologybioRxivPreprint
A discovery-based proteomics approach identifies protein disulfide isomerase (PDIA1) as a biomarker of β cell stress in type 1 diabetes
F. Syed, D. Singhal, K. Raedschelders…·C. Evans-Molina
The paper identifies PDIA1 as a biomarker of β cell stress in type 1 diabetes using proteomics and validation in mouse models and human samples.
DOI 10.1101/2021.12.22.473924 - ImmunologybioRxiv
Lateral plate mesoderm cell-based organoid system for NK cell regeneration from human pluripotent stem cells
D. Huang, J. Li, F. Hu…·J. Wang
This study develops an organoid-based method to generate large quantities of NK cells from human pluripotent stem cells without feeder cells, achieving efficient and scalable iNK cell production.
DOI 10.1038/s41421-022-00467-2 - ImmunologybioRxiv
Carbon Dot-based Fluorescent Antibody Nanoprobes as Brain Tumour Glioblastoma Diagnostics.
M. Ghirardello, R. Shyam, X. Liu…·K. Kurian
This paper develops carbon dot-based fluorescent antibody nanoprobes for glioblastoma diagnostics, showing they are robust, photostable, and applicable in clinical settings.
DOI 10.1039/d2na00060a - MicrobiologybioRxivPreprint
The energy requirements of ion homeostasis determine the lifespan of starving bacteria
S. J. Schink, M. Polk, E. Athaide…·M. Basan
This study identifies ion homeostasis as a key determinant of bacterial lifespan during starvation, showing that reducing its energetic cost extends survival.
- Pharmacology & ToxicologybioRxiv
Robust and Efficient Assessment of Potency (REAP): A Quantitative Tool for Dose-response Curve Estimation
S. Zhou, X. Liu, X. Fang…·J. J. Lee
The paper introduces a robust beta regression method for dose-response curve estimation and develops a web tool for its implementation.
DOI 10.7554/elife.78634 - PathologybioRxiv
A live attenuated influenza virus-vectored intranasal COVID-19 vaccine provides rapid, prolonged, and broad protection against SARS-CoV-2 infection
J. Chen, P. Wang, L. Yuan…·N. Xia
This study develops an intranasal vaccine against SARS-CoV-2 using an influenza virus vector and shows it provides rapid, prolonged, and broad protection against multiple variants in hamsters.
DOI 10.1016/j.scib.2022.05.018 - Cancer BiologybioRxivPreprint
Macrophage proliferation machinery leads to PDAC progression, but susceptibility to innate immunotherapy.
D. G. DeNardo, C. Zuo, J. M. Baer…·J. D. Weber
This study shows that TAM proliferation in PDAC is driven by CSF1 from fibroblasts, leading to immunosuppression and tumor progression, but also increasing sensitivity to CD40 agonist therapy.
- Cell BiologybioRxiv
ETV2 regulates PARP-1 binding protein to induce ER stress-mediated cell death in tuberin-deficient cells
S. Shrestha, A. Lamattina, G. Pacheco-Rodriguez…·S. El-Chemaly
This study identifies ETV2 as a regulator of cell death in Tsc2-deficient cells through PARPBP and ER stress, suggesting a potential therapeutic target for LAM.
DOI 10.26508/lsa.202201369 - BioengineeringAdvanced SciencePeer-reviewed
Engineered small extracellular vesicles as a FGL1/PD-L1 dual-targeting delivery system for alleviating immune rejection
H.-i. Tsai, Y. Wu, X. Liu…·H. Chen
This study develops engineered small extracellular vesicles targeting FGL1 and PD-L1 to suppress immune rejection in transplantation by inhibiting T cell activation and improving graft survival.
DOI 10.1002/advs.202102634 - ImmunologybioRxivPreprint
Multi-omics analysis for potential inflammation-related genes involved in tumor immune evasion via extended application of epigenetic data
C. Huang, N. Wang, N. Zhang…·B. Du
The paper identifies STAT2 as a regulator of PD-L1 expression through multi-omics analysis and experimental validation, linking it to tumor immune evasion.
- MicrobiologybioRxiv
mRNA Vaccines Induce Rapid Antibody Responses in Mice
M. Gebre, S. Rauch, N. Roth…·D. H. Barouch
This study shows mRNA vaccines induce rapid antibody responses in mice by day 5, outperforming DNA, protein, and adenovirus vaccines for SARS-CoV-2 and HIV-1 antigens.
DOI 10.1038/s41541-022-00511-y