Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
9 papers
Recent·Most cited
J. B. Hein, H. T. Nguyen, D. Garvanska, I. Nasa, Y. Feng, B. Lopez-Mendez, N. E. Davey, A. Kettenbach, P. M. Fordyce, J. Nilsson
The paper develops an in vitro assay to determine phosphatase specificity and applies it to study mitotic exit, revealing substrate preferences and biological relevance.
bioRxiv · May 14, 2023 · PreprintCell Biology
B. Meszaros, A. Hatos, N. Palopoli, F. Quaglia, E. Salladini, K. Van Roey, H. Arthanari, Z. Dosztanyi, I. C. Felli, P. D. Fischer, J. Hoch, C. M. Jeffries, S. Longhi, E. Maiani, S. Orchard, , N. E. Davey
The paper introduces MIADE guidelines to standardize metadata for experiments studying intrinsically disordered proteins, improving data interpretation and reproducibility.
bioRxiv · Jul 12, 2022 · PreprintScientific Communication & Education
F. Mihalic, L. Simonetti, G. Giudice, M. Rubin Sander, R. Lindqvist, M. B. A. Peters, C. Benz, E. Kassa, D. Badgujar, R. Inturi, M. Ali, I. Krystkowiak, A. Sayadi, E. Andersson, H. Aronsson, , Y. Ivarsson
The paper uses phage-based screening to identify 1,712 virus-host interactions mimicking host short linear motifs, revealing therapeutic targets for broad-spectrum antivirals.
bioRxiv · Jun 19, 2022 · PreprintBiochemistry
J. Kliche, D. H. Garvanska, L. Simonetti, D. Badgujar, D. Dobritzsch, J. Nilsson, N. E. Davey, Y. Ivarsson
The paper identifies 252 phospho-modulated short linear motif-based protein-protein interactions using a proteomic peptide-phage display library and validates several through affinity measurements and structural analysis.
bioRxiv · Jun 8, 2022 · PreprintBiochemistry
M. Akdel, D. E. Pires, E. Porta-Pardo, J. Janes, A. O. Zalevsky, B. Meszaros, P. Bryant, L. L. Good, R. A. Laskowski, G. Pozzati, A. Shenoy, W. Zhu, P. Kundrotas, V. Ruiz-Serra, C. H. Rodrigues, , P. Beltrao
This study assesses AlphaFold 2's applications in structural biology, finding it outperforms existing tools in predicting disorder, complexes, and structural features with high confidence.
bioRxiv · Sep 26, 2021 · PreprintBiophysics
T. Kruse, C. Benz, D. H. Garvanska, R. Lindqvist, F. Mihalic, F. Coscia, R. Inturi, A. Sayadi, L. Simonetti, E. Nilsson, M. Ali, J. Kliche, A. Moliner Morro, A. Mund, E. Andersson, , Y. Ivarsson
The paper identifies coronavirus-host protein interaction motifs, revealing SARS-CoV-2 specific mechanisms and a peptide-based inhibitor that blocks infection.
bioRxiv · Apr 19, 2021Biochemistry
C. Benz, M. Ali, I. Krystkowiak, L. Simonetti, A. Sayadi, F. Mihalic, J. Kliche, E. Andersson, P. Jemth, N. E. Davey, Y. Ivarsson
The paper introduces HD2, a proteome-scale method for identifying and characterizing SLiM-mediated protein interactions with amino acid resolution, and provides tools for analyzing the results.
bioRxiv · Apr 13, 2021Biochemistry
C. P. Wigington, J. Roy, N. P. Damle, V. K. Yadav, C. Blikstad, E. Resch, C. J. Wong, D. R. Mackay, J. T. Wang, I. Krystkowiak, D. A. Bradburn, E. Tsekitsidou, S. H. Hong, M. A. Kaderali, S.-l. Xu, , M. S. Cyert
The paper identifies calcineurin (CN) substrates and interactors using a combination of experimental and computational methods, revealing novel roles for CN in regulating nuclear pore complex proteins.
bioRxiv · Mar 26, 2020Cell Biology
R. J. Smith, M. H. Cordeiro, N. E. Davey, G. Vallardi, A. Ciliberto, F. Gross, A. T. Saurin
The paper shows PP1 and PP2A-B56 use opposite phospho-dependencies to control distinct mitotic processes at the kinetochore through differential kinase input responses.
bioRxiv · May 5, 2019Cell Biology