Author
Z. Li
Aarhus University HospitalPrimary ORCID profile (0009-0002-5965-305X · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2022-2022 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 21 mutual co-author links473 papers
Recent·Most cited
- MicrobiologybioRxivPreprint
Resistance of SARS-CoV-2 Omicron Subvariant BA.4.6 to Antibody Neutralization
Q. Wang, Z. Li, J. Ho…·D. D. Ho
This study evaluates the neutralization resistance of SARS-CoV-2 Omicron subvariants BA.4.6, BA.4.7, and BA.5.9 to antibodies, finding increased resistance to certain monoclonal antibodies and vaccine-induced sera.
DOI 10.1101/2022.09.05.506628 - BiochemistrybioRxiv
Structural rearrangements of a caspase-like protease TPR-CHAT govern virus-host discrimination during type III-E CRISPR-Caspase immunity
N. Cui, J.-T. Zhang, Z. Li…·N. Jia
The paper reports cryo-EM structures of gRAMP-crRNA and gRAMP-crRNA-TPR-CHAT complexes, revealing how TPR-CHAT discriminates between self and non-self RNA targets through conformational changes.
DOI 10.1038/s41467-022-35275-5 - Cancer BiologyMolecular Therapy - Nucleic AcidsPeer-reviewed
Comprehensive RNA-Seq Reveals Molecular Changes in Kidney Malignancy Among People Living with HIV
This study uses RNA-seq to identify molecular changes in kidney cancer among people living with HIV, finding altered expression of specific genes and pathways associated with cancer progression.
DOI 10.1016/j.omtn.2022.06.002 - Cell BiologybioRxivPreprint
MAM-STAT3-induced upregulation of mitochondrial Ca+2 causes immunosenescence in patients with type A mandibuloacral dysplasia
A. A. Padhiar, X. Yang, Z. Li…·G. Zhou
This study identifies mitochondrial Ca+2 dysregulation via MAM-STAT3 as a driver of immunosenescence in type A mandibuloacral dysplasia.
DOI 10.1101/2022.08.31.504639 - BioengineeringbioRxiv
Optimized Monophasic Pulses with Equivalent Electric Field for Rapid-Rate Transcranial Magnetic Stimulation
B. Wang, J. Zhang, Z. Li…·S. M. Goetz
This paper designs optimized monophasic TMS pulses that reduce coil heating while maintaining neuromodulation effectiveness, enabling higher pulse rates.
DOI 10.1088/1741-2552/acd081 - PaleontologybioRxiv
Survival of mineral-bound peptides into the Miocene
B. Demarchi, M. Mackie, Z. Li…·J. Clarke
This study shows that peptide sequences from ostrich eggshells survived for 6.5-9 million years, extending the known preservation of ancient proteins to the Miocene.
DOI 10.7554/elife.82849 - ImmunologybioRxiv
The Toll pathway mediates Drosophila resilience to Aspergillus mycotoxins through specific Bomanins
R. Xu, Y. Lou, A. Tidu…·D. Ferrandon
This study shows that the Drosophila Toll pathway and specific Bomanins enhance resilience to Aspergillus mycotoxins by mitigating toxin effects rather than directly killing pathogens.
DOI 10.15252/embr.202256036 - Cancer BiologybioRxiv
Intratumoral heterogeneity and clonal evolution induced by HPV integration
K. Akagi, D. E. Symer, M. Mahmoud…·M. L. Gillison
This study identifies heterocateny as a structural variation caused by HPV integration, promoting intratumoral heterogeneity and clonal evolution in oropharyngeal cancers.
DOI 10.1158/2159-8290.cd-22-0900 - Cell BiologybioRxiv
A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation
H. Xu, Z. Li, C.-C. Kuo…·M. Zenke
The paper identifies a long non-coding RNA that regulates IRF8 autoactivation through a negative feedback loop in dendritic cell differentiation.
DOI 10.7554/elife.83342 - BiochemistrybioRxiv
Structural and Dynamic Basis of DNA Capture and Translocation by Mitochondrial Twinkle Helicase
Z. Li, P. Kaur, C.-Y. Lo…·Y. Gao
This study uses cryo-EM and HS-AFM to determine the structure of Twinkle helicase and reveals its DNA capture and translocation mechanism, highlighting disease-related mutations and stochastic ATP hydrolysis.
DOI 10.1093/nar/gkac1089 - Plant BiologybioRxivPreprint
Plasmodesmata-located proteins regulate plasmodesmal function at specific cell interfaces in Arabidopsis
Z. Li, S.-L. Liu, C. Montes-Serey…·K. Aung
This study identifies PDLP5 and PDLP6 as proteins regulating plasmodesmal function at specific cell interfaces in Arabidopsis by interacting with SUS6 and CalS7 to control callose deposition.
DOI 10.1101/2022.08.05.502996 - BioengineeringbioRxiv
Combinatorial perturbation sequencing on single cells using microwell-based droplet random pairing
R. Xie, Y. Liu, S. Wang…·Z. Li
This paper introduces CP-seq, a method to test thousands of drug combinations on single cells using microwell-based droplet random pairing and single-cell RNA sequencing.
DOI 10.1016/j.bios.2022.114913 - MicrobiologybioRxiv
Antigenic characterization of the SARS-CoV-2 Omicron subvariant BA.2.75
Q. Wang, S. Iketani, Z. Li…·D. D. Ho
This study characterizes the antigenic properties of the SARS-CoV-2 Omicron subvariant BA.2.75, showing increased neutralization resistance to vaccinated sera and specific monoclonal antibodies.
DOI 10.1016/j.chom.2022.09.002 - ImmunologybioRxiv
Modular Pooled Discovery of Synthetic Knockin Sequences to Program Durable Cell Therapies
F. Blaeschke, Y. Y. Chen, R. Apathy…·A. Marson
The paper develops ModPoKI, a platform for modular construction of DNA knockin libraries to identify gene constructs that enhance T cell function and persistence.
DOI 10.1016/j.cell.2023.08.013 - Cell BiologybioRxivPreprint
Anti-apoptotic BH3-only proteins inhibit Bak
S. Ruehl, C. S. Guy, Z. Li…·D. R. Green
The paper identifies BNIP5 and Bcl-G as anti-apoptotic BH3-only proteins that inhibit Bak activation, preventing apoptosis.
DOI 10.1101/2022.07.24.499430 - Cancer BiologybioRxivPreprint
Mechanistic basis for targeting homologous recombination defective liver cancer via synthetic lethality
M. Zeng, Z. Tang, L. Ren…·C. Liu
This study identifies a novel subtype of HRD in HBVHCC caused by CDW19S perturbation and shows it can be targeted therapeutically.
DOI 10.1101/2022.07.21.500952 - ImmunologybioRxivPreprint
Integrated single-cell sequencing analysis reveals peripheral immune landscape across the human lifespan
R. Tong, R. Li, Y. Zhao…·J. Pu
This study uses single-cell sequencing to analyze immune cell dynamics across human lifespan, identifying age-related changes in T cell function, cell interactions, and B cell subsets.
- Cell BiologybioRxiv
Muscleblind-like proteins use modular domains to localize RNAs by riding kinesins and docking to membranes
R. P. Hildebrandt, K. R. Moss, A. Janusz-Kaminska…·E. T. Wang
The paper identifies how MBNL proteins localize RNAs via kinesin interaction and membrane docking, using a modular approach to study RNA-binding protein functions.
DOI 10.1038/s41467-023-38923-6 - ImmunologybioRxivPreprint
Lupus disease flares are concordant with immune responses to blooms of lipoglycan-expressing Ruminococcus blautia gnavus strains arising from unstable gut microbiota communities
DOI 10.1101/2022.06.28.498027 - Pharmacology & ToxicologybioRxiv
A Novel Selective ERK1/2 Inhibitor, Laxiflorin B, Targets EGFR Mutation Subtypes in Non-small-cell Lung Cancer
C. Chiang, M. Zhang, J. Huang…·D. Zheng
This study identifies Laxiflorin B, a novel ERK1/2 inhibitor, showing efficacy against EGFR mutant NSCLC through apoptosis induction and suppression of AREG/EREG.
DOI 10.1038/s41401-023-01164-w - Evolutionary BiologybioRxiv
Predicting the antigenic evolution of SARS-COV-2 with deep learning
W. Han, N. Chen, X. Xu…·P. P.-H. Cheung
This paper predicts SARS-CoV-2 antigenic evolution using MLAEP, a deep learning model that identifies mutations associated with immune escape and validates them through experiments.
DOI 10.1038/s41467-023-39199-6 - MicrobiologybioRxivPreprint
Copresent microbiome and short-chain fatty acids profiles of plant biomass utilization in rumen simulation technique system
T. Shi, T. Zhang, X. Wang…·Y. Jiang
This study investigates microbiome and short-chain fatty acids (SCFAs) profiles in rumen simulation technique (RUSITEC) systems inoculated with goat and cow rumen contents, identifying copresent microbial genomes associated with substrate degradation.
DOI 10.1101/2022.06.22.497131 - MicrobiologybioRxivPreprint
Efficacy of Parainfluenza Virus 5 (PIV5)-vectored Intranasal COVID-19 Vaccine as a Single Dose Vaccine and as a Booster against SARS-CoV-2 Variants
A. Beavis, Z. Li, K. Briggs…·B. He
This paper evaluates the immunogenicity and efficacy of PIV5-vectored COVID-19 vaccines against SARS-CoV-2 variants in hamsters, showing they induce strong neutralizing antibodies and provide protection as single doses or boosters.
DOI 10.1101/2022.06.07.495215 - MicrobiologybioRxivPreprint
Biosynthetic diversification of peptaibol mediates fungus-mycohost interactions
The paper investigates how peptaibol structural diversity in Trichoderma fungi mediates interactions with mycohosts, showing that these compounds are essential for inhibiting saprotrophic fungi.
DOI 10.1101/2022.06.05.494846 - BioengineeringbioRxivPreprint
A flexible, efficient, and scalable platform to produce circular RNAs as new therapeutics
H. Wei, C. Chen, K. Zhang…·Z. Wang
This paper develops a self-catalyzed system to produce stable, low-immunogenic circRNAs for therapeutic protein expression, showing improved efficacy compared to linear mRNAs.
DOI 10.1101/2022.05.31.494115 - MicrobiologybioRxiv
Antibody evasion by SARS-CoV-2 Omicron subvariants BA.2.12.1, BA.4, and BA.5
Q. Wang, Y. Guo, S. Iketani…·D. Ho
This study analyzes antibody evasion by SARS-CoV-2 Omicron subvariants BA.2.12.1, BA.4, and BA.5, finding BA.4/5 shows greater resistance to neutralizing antibodies than BA.2.12.1.
DOI 10.1038/s41586-022-05053-w - BiochemistrybioRxiv
An Engineered Amber-Emitting Nano Luciferase and Its Use for Immunobioluminescence Imaging in Vivo
Y. Xiong, Y. Zhang, Z. Li…·H. Ai
The paper develops a red-shifted NanoLuc variant (QLuc) and uses it for in vivo immunobioluminescence imaging to improve deep-tissue visualization in mice.
- Cancer BiologybioRxivPreprint
Ultra-small bispecific fusion protein augments tumor penetration and treatment efficacy for pancreatic cancer
Q. Wang, J. Wang, H. Yan…·X. Zhao
This paper develops an ultra-small bispecific fusion protein, Bi-fp50, that improves tumor penetration and treatment efficacy for pancreatic cancer by targeting EGFR and VEGF.
DOI 10.1101/2022.05.17.492287