Topic · Oncology · Medicine
Cancer Immunotherapy and Biomarkers
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
481 papers
- ImmunologybioRxivPreprint
Mettl3-catalyzed m6A methylation determines CD8+ T cell differentiation fate in tumor
Puspendu Ghosh, Anupam Gautam, Debashree Basak…·Shilpak Chatterjee
This study identifies Mettl3-m6A methylation as a regulator of CD8+ T cell differentiation fate in tumors, showing its role in promoting terminal exhaustion and its potential as a target to enhance immunotherapy.
- PathologybioRxivPreprint
Differences in T-cell counts and neighborhood patterns in human colorectal adenomas and sessile serrated lesions
Souvik Seal, Lauren Rose Fanning, Evan M. Bagley…·Kristin Wallace
The paper compares T-cell counts and spatial patterns in colorectal adenomas and sessile serrated lesions, finding differences in T-cell infiltration and clustering by lesion type.
- Cancer BiologybioRxivPreprint
Cell-Permeable Morpholino Inhibits Programmed Death-Ligand 1 at mRNA Level and Potentiates Antitumor Immunity in Breast Cancer
Sudipta Sarkar, Ujjwal Ghosh, Subhamoy Pratihar, Surajit Sinha
This study develops a cell-permeable morpholino ASO targeting PD-L1 in breast cancer, which reduces PD-L1 expression and enhances antitumor immunity when combined with durvalumab.
- ImmunologybioRxivPreprint
TMEM33 deletion potentiates anti-tumor CD8+ T cell immunity
Matthew P. Jackson, T. Zhao, Gusztav Milotay…·Eileen E. Parkes
This study shows TMEM33 limits progenitor-exhausted CD8+ T cells, enhances anti-tumor responses, and correlates with improved survival in melanoma patients.
DOI 10.64898/2026.01.01.697288 - Cancer BiologybioRxivPreprint
Spatial patterns of APOBEC mutagenesis in the tumour microenvironment of Asian breast cancer
Zi-Ching Tan, Yang Wu, Zhen Wei Neo…·Jia Wern Pan
This study investigates how APOBEC mutagenesis and A3B deletion affect immune activation in Asian breast cancer using spatial transcriptomics, finding that mitochondrial mutations and cGAS-STING pathway activation drive immune responses instead of neoantigens.
DOI 10.64898/2026.01.01.697328 - Cancer BiologybioRxivPreprint
MELK controls tumor metabolism to promote resistance to melanoma therapy
Ana Carolina Bastos Sant'Anna Silva, Patricia Abbe, Sophie Pagnotta…·Stéphane Rocchi
This study identifies MELK as a key driver of metabolic adaptation and therapy resistance in melanoma, showing that inhibiting MELK can sensitize resistant cells to immunotherapy.
DOI 10.64898/2025.12.31.697178 - ImmunologybioRxivPreprint
Macrophage-Dendritic Cell-T-Cell Tetrads Orchestrate Antitumor Immunity and Response to Checkpoint Blockade
Mehdi Chaib, Muhammad Aminu, Shelley M. Herbrich…·Padmanee Sharma
The paper identifies tetrads as a multicellular immune unit that correlates with antitumor immunity and response to checkpoint blockade in mouse and human tumors.
- ImmunologybioRxivPreprint
Analysis of intratumoral immune heterogeneity reveals spatial organisation of immunosuppression in breast cancer
Christina Metoikidou, Pierre‐Emmanuel Bonté, Vadim K Karnaukhov…·Sebastián Amigorena
This study maps spatial immune heterogeneity in luminal breast cancer, showing progressive immunosuppression from tumor margins to core.
- Cancer BiologybioRxivPreprint
Hallmarks of adaptive immunity in a metastatic clear cell renal cell carcinoma (ccRCC) long-term elite survivor
Felicia Tucci, Edward Drydale, James M. Bancroft…·Rachael J. M. Bashford-Rogers
This study identifies clonal persistence, tertiary lymphoid structures (TLS) engagement, and coordinated B-T cell immune surveillance as hallmarks of durable tumour control in a long-term survivor of metastatic ccRCC.
- Cancer BiologybioRxivPreprint
Collagen remodeling promotes a GPCR-mediated mechanosensory immune checkpoint in ADGRG1+ CD8+ T cells and serves as a spatial biomarker of response to immunotherapy
Sonal Srivastava, John Joseph Powers, Jay H. Mehta…·Antonio L. Amelio
The paper identifies collagen remodeling as a mechanism that activates a GPCR-mediated immune checkpoint in ADGRG1+ CD8+ T cells, influencing response to immunotherapy.
DOI 10.64898/2025.12.19.695209 - Cancer BiologybioRxivPreprint
PKMYT1 inhibition induces DNA damage and synergizes with immune checkpoint blockade in CCNE1-amplified gastroesophageal adenocarcinoma
Se Jin Jang, Lawrence Wen Wu, Jimyung Park…·Ryan H. Moy
This study shows PKMYT1 inhibition causes DNA damage and enhances anti-PD-1 therapy in CCNE1-amplified gastroesophageal adenocarcinoma.
2 citations - ImmunologybioRxivPreprint
Cellular interactions in the sentinel lymph node predict melanoma recurrence
Sabrina M. Solis, Yang Yang, Yee Hoon Foong…·Ramin S. Herati
The paper identifies Treg-CD8 T cell interactions in the sentinel lymph node as predictors of melanoma recurrence in Stage II patients.
1 citation - ImmunologybioRxivPreprint
Dual PD-L1/TIGIT blockade induces PNAd+ HEV-like vessels and CD62L+ lymphocyte recruitment, driving rhabdoid tumor rejection
Stéphanie Fitte-Duval, S Silva, Rafael Mena‐Osuna…·Eliane Piaggio
This study shows that combining PD-L1 and TIGIT blockade in a mouse model of rhabdoid tumors leads to tumor regression by promoting immune cell recruitment and vascular changes.
DOI 10.64898/2025.12.15.692132 - ImmunologybioRxivPreprint
A Conserved Landscape of Chemokine Receptor Co-expression Defines the Functional States of CD8+ T Cells in Melanoma
Rodney Macedo, David W Harle, Kevin Hoffer-Hawlik…·Ran Reshef
The paper identifies co-expression patterns of chemokine receptors on CD8+ T cells that distinguish anti-tumor efficacy from off-target toxicity in melanoma.
- BioinformaticsbioRxivPreprint
HINS: HLA-mediated immunogenic neoantigen score for robust prediction of immune checkpoint blockade response
Qiang Yang, Long Xu, Weihe Dong…·Guohua Wang
This paper introduces HINS, a deep-learning method that predicts immune checkpoint blockade response using HLA-mediated immunogenic neoantigen scores, achieving high accuracy in identifying responders.
DOI 10.64898/2025.12.09.693330 - Cancer BiologybioRxivPreprint
Perturbational single-cell profiling of patient tumors defines lineage- and context-specific programs of innate immune resistance
C. Perry, A. Frey, Y. Fei…·J.J. Ishizuka
The paper uses patient tumor samples to identify lineage- and context-specific mechanisms of innate immune resistance through perturbational single-cell RNA sequencing.
- Cancer BiologybioRxivPreprint
Machine perfusion and single-cell spatial transcriptome mapping identifies novel immune escape mechanisms in colorectal cancer liver metastasis
Peter Kok-Ting Wan, Ranchu Cheng, David Johnson…·Alex Nicolas Gordon-Weeks
DOI 10.64898/2025.12.09.693114 - Cancer BiologybioRxivPreprint
Isoflavones impair response to anti-PD1 therapy in murine breast cancer models, irrespective of dietary fiber and fecal short chain fatty acid levels
Fábia de Oliveira Andrade, Kerrie B. Bouker, Melike Özgül Önal…·Leena Hilakivi-Clarke
This study shows that isoflavones in the diet impair anti-PD1 therapy response in breast cancer models, regardless of dietary fiber or SCFA levels, and that ER blockade can restore responsiveness.
DOI 10.64898/2025.12.05.692375 - Cancer BiologybioRxivPreprint
Dual inhibition of the nonsense mediated mRNA decay enhances tumour immunogenicity, drives immunoediting, and potentiates checkpoint blockade
Ivan Zadra, Davor Orsolic, Dimitri Kounis…·Ana Janic
This study shows that inhibiting nonsense-mediated mRNA decay enhances tumour immunogenicity, drives immunoediting, and improves checkpoint blockade efficacy in preclinical models.
3 citations - ImmunologybioRxivPreprint
Antibody peptide epitope conjugates for αPD-1 therapy-resistant head and neck squamous cell carcinoma
Yifang Shui, David G. Millar, Lukas M. Altenburger…·Thorsten R. Mempel
This study develops antibody-peptide epitope conjugates (APECs) to enhance anti-tumor activity in ICB-resistant HNSCC by leveraging viral peptide-loaded MHC I proteins and protease activity.
DOI 10.64898/2025.11.28.691238 - Cancer BiologybioRxivPreprint
Deciphering Tumor Microenvironment Dynamics in Tumorigenesis and Lymph Node Metastasis of Esophageal Squamous Cell Carcinoma using Single-Cell RNA Sequencing
H. K. Na, Tae Hee Hong, Chung Lee…·Dae Joon Kim
This study uses single-cell RNA sequencing to analyze immune and stromal differences between primary tumors and metastatic lymph nodes in ESCC, revealing distinct exhaustion trajectories and suppressive circuits.
- ImmunologybioRxivPreprint
PD-1 blockade during T cell priming enhances long-term protection against metastatic tumors by epigenetically tuning T cell exhaustion
Teresa Dinter, Sebastian D. Mackowiak, Zachary J. Rogers…·Stefani Spranger
This study shows PD-1 blockade during T cell priming promotes an intermediate-exhausted CD8 T cell state that supports durable anti-tumor immunity after surgery and metastatic challenge, better than effector or memory-like T cells.
DOI 10.1101/2025.11.25.690601 - Cancer BiologybioRxivPreprint
Oncogenic RAS activity is linked to immune priming and adenosine-driven immune evasion in lung adenocarcinoma
Sophie de Carné Trécesson, Philip East, Claire E. Pillsbury…·Julian Downward
This study links oncogenic RAS activity to immune priming and adenosine-driven immune evasion in lung adenocarcinoma, showing both pro-immunogenic and immunosuppressive effects.
DOI 10.1101/2025.11.25.690426 - ImmunologybioRxivPreprint
Synergistic role of riboflavin-auxotrophic Enterococcus for MR1 expression and intra-tumoral mucosal associated invariant T (MAIT) cell activation
Pakhi Birla, Lansaol Yang, W. Shan…·Franck Housseau
The paper identifies riboflavin-auxotrophic Enterococcus spp. that synergize with metabolites to boost MR1 expression and activate MAIT cells in the tumor microenvironment.
- Cancer BiologybioRxivPreprint
TAp73 mediates anti-tumor immunity through regulation of lipid metabolism in the lung tumor microenvironment
Hayley D. Ackerman, Vanessa Y. Rubio, Andrew John Davis…·Elsa Renee Flores
This study shows TAp73 regulates lipid metabolism in lung tumor microenvironment to enhance anti-tumor immunity through T-cell activation.
1 citation - ImmunologybioRxivPreprint
Dual Transcriptional Drivers of Immune Suppression in SACC: NOTCH1 for Cellular and MYB for Humoral Immunity
Guoliang Yang, Xudong Wang, Ye Tian…·Xiaohong Chen
This paper identifies NOTCH1 and MYB as dual transcriptional drivers of immune suppression in salivary adenoid cystic carcinoma, revealing their roles in suppressing T-cell and B-cell immunity through distinct signaling pathways.
DOI 10.1101/2025.11.17.688163 - Cancer BiologybioRxivPreprint
Aging alters tumor cell - T cell crosstalk to promote breast cancer progression
Shanshan Yin, Kay T. Yeung, Sainath Mamde…·Peter D. Adams
This study shows that aging reduces T cell recruitment in breast cancer by decreasing Cxcl9/Cxcl10 expression in tumor cells, leading to weakened anti-tumor immunity.
1 citation - Cancer BiologybioRxivPreprint
Targeting STING-ATM axis overcomes radiotherapy-induced immune suppression and restores anti-tumor immunity in nasopharyngeal carcinoma
Tzu-Tung Liu, Kai-Ping Chang, Yunong Wang…·Shu‐Chen Liu
This study shows that targeting the STING-ATM axis with a STING agonist overcomes radiotherapy-induced immune suppression in nasopharyngeal carcinoma, enhancing anti-tumor immunity and tumor control.
- Cancer BiologybioRxivPreprint
Taxonomy-free fecal microbiome profiles enable robust prediction of immunotherapy response and toxicity in melanoma
Anastasia Lucas, McKenna Reale, Yuri I. Wolf…·Noam Auslander
This study identifies microbiome-derived protein biomarkers for predicting immunotherapy response and toxicity in melanoma without relying on taxonomic classification.
DOI 10.1101/2025.11.06.686285