Author
W. Zhang
Shanghai Jiao Tong University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2026 · peak 69/yrCo-Author Collaboration Network
10 top collaborators · 44 mutual co-author links328 papers
Recent·Most cited
- PathologybioRxiv
In-depth investigation of microRNA-mediated cross-kingdom regulation between Asian honey bee and microsporidian
X. Fan, W. Zhang, K. Zhang…·R. Guo
This study investigates microRNA-mediated cross-kingdom regulation between Asian honey bee and microsporidian using RNA-seq and small RNA-seq data, identifying miRNA-target mRNA interactions and their roles in glycolysis, virulence, and immune response.
DOI 10.3389/fmicb.2022.1003294 - Cell BiologybioRxivPreprint
Mex67 paralogs mediate division of labor in trypanosome RNA processing and export.
S. O. Obado, M. Stein, E. Hegedusova…·M. P. Rout
This study identifies distinct roles for three Mex67 paralogs in trypanosome RNA processing and export, showing non-redundant functions in mRNA export and ribosome biogenesis.
DOI 10.1101/2022.06.27.497849 - Cancer BiologybioRxivPreprint
Liver Endothelium Microenvironment Promotes HER3-mediated Cell Growth in Pancreatic ductal adenocarcinoma
W. Zhang, M. Wright, M. Rathore…·R. Wang
This study shows liver endothelial cells promote PDAC growth via HER3-AKT signaling, suggesting HER3-targeted therapies for HER3-positive metastatic PDAC.
DOI 10.1101/2022.06.24.497507 - Cell BiologybioRxiv
Cis-membrane association of human ATG8 proteins N-terminus mediates autophagy
S. Tooze, W. Zhang, T. Nishimura…·L. Thukral
This study shows that the N-termini of lipidated ATG8 proteins associate with membranes in cis, which is essential for autophagosome expansion and efficient p62 degradation.
- Plant BiologybioRxivPreprint
The trifecta of disease avoidance, silique shattering resistance and flowering period elongation achieved by the BnaIDA editing in Brassica napus
R. Geng, Y. Shan, L. Li…·X.-L. Tan
This study edits two IDA homologues in Brassica napus to prevent petal shedding, enhance silique shattering resistance, and extend flowering period, without affecting agronomic traits.
DOI 10.1101/2022.06.09.493885 - Cancer BiologybioRxiv
eRNA profiling uncovers the enhancer landscape of oesophageal adenocarcinoma and reveals new deregulated pathways
I. Ahmed, S.-H. Yang, S. Ogden…·A. Sharrocks
The paper identifies enhancer RNAs in oesophageal adenocarcinoma using RNA-seq and open chromatin maps, revealing new deregulated pathways and their clinical relevance.
DOI 10.7554/elife.80840 - Cell BiologybioRxiv
Senescent Preosteoclast Secretome Promotes Metabolic Syndrome Associated Osteoarthritis through Cyclooxygenase 2
M. Wan, W. Su, G. Liu…·S. Demehri
This study identifies a senescent preosteoclast secretome-COX2/PGE2 axis as a driver of metabolic syndrome-associated osteoarthritis, with selective COX2 inhibitors showing therapeutic potential.
- Cancer BiologybioRxivPreprint
AI inspired discovery of new biomarkers for clinical prognosis of liver cancer
J. Liang, W. Zhang, J. Yang…·L. Kong
This paper introduces PathFinder, an interpretable AI framework for discovering new tissue biomarkers in liver cancer, identifying tumor necrosis as a prognostic factor.
DOI 10.1101/2022.05.03.490448 - Cell BiologyCellPeer-reviewed
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball patterned arrays
A. Chen, S. Liao, M. Cheng…·J. Wang
This study develops Stereo-seq, a high-resolution spatial transcriptomic method, to analyze mouse organogenesis and map developmental disease loci.
DOI 10.1016/j.cell.2022.04.003 - ImmunologybioRxiv
BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection
Y. R. Cao, A. Yisimayi, F. Jian…·X. S. Xie
This study investigates antibody evasion by SARS-CoV-2 Omicron sublineages BA.2.12.1, BA.4, and BA.5 against plasma from vaccination and BA.1 infection, showing increased neutralization escape.
DOI 10.1038/s41586-022-04980-y - MicrobiologybioRxivPreprint
Antibody Resistance of SARS-CoV-2 Omicron BA.1, BA.1.1, BA.2 and BA.3 Sub-lineages
J. Ai, X. Wang, X. He…·P. Wang
This study compares antibody neutralization efficacy against SARS-CoV-2 Omicron sub-lineages BA.1, BA.1.1, BA.2, and BA.3, showing increased resistance and the benefit of vaccine boosters.
DOI 10.1101/2022.04.07.487489 - Plant BiologybioRxiv
Point mutations in the catalytic domain disrupt cellulose synthase (CESA6) vesicle trafficking and protein dynamics
L. Huang, W. Zhang, X. Li…·C. Zhang
A comprehensive mutational analysis of the catalytic domain of Arabidopsis CESA6 reveals distinct roles for conserved motifs in CSC vesicle trafficking, protein complex formation, or protein dynamics.
DOI 10.1093/plcell/koad110 - EcologybioRxiv
Drivers of nematode diversity in forest soils across climatic zones
Y. Shao, Z. Wang, T. Liu…·S. Fu
This study identifies climate-driven factors shaping nematode diversity in forest soils across different climatic zones.
DOI 10.1098/rspb.2023.0107 - Cancer BiologybioRxiv
Aberrant DNA methylation distorts developmental trajectories in atypical teratoid/rhabdoid tumors
M. Pekkarinen, K. Nordfors, J. Uusi-Makela…·K. J. Rautajoki
This study identifies aberrant DNA methylation patterns in AT/RTs that disrupt neural development and contribute to tumor malignancy.
DOI 10.26508/lsa.202302088 - Cell BiologybioRxiv
Lnc956-TRIM28-HSP90B1 complex on replication forks promotes CMG helicase retention to ensure stem cell genomic stability and embryogenesis
W. Zhang, M. Tang, L. Wang…·P. Zheng
The paper identifies Lnc956 as a non-coding RNA that forms a complex with TRIM28 and HSP90B1 to prevent replication fork collapse and maintain genomic stability in mouse embryonic stem cells.
DOI 10.1126/sciadv.adf6277 - Cell BiologyFrontiers in ImmunologyPeer-reviewed
RORA regulates neutrophil migration and activation in zebrafish
A. Y. Hsu, T. Wang, R. Syahirah…·Q. Deng
This study identifies miR-99 and ROR as regulators of neutrophil migration and anti-microbial defense in zebrafish.
DOI 10.3389/fimmu.2022.756034 - Pharmacology & ToxicologyeLifePeer-reviewed
NBI-921352, a First-in-Class, Na V 1.6 Selective, Sodium Channel Inhibitor That Prevents Seizures in Scn8a Gain-of- Function Mice, and Wild-Type Mice and Rats
J. Johnson, T. Focken, K. Khakh…·W
This paper describes NBI-921352, a selective NaV1.6 inhibitor that prevents seizures in Scn8a gain-of-function mice and wild-type models, with better efficacy and tolerability than existing antiseizure drugs.
DOI 10.7554/elife.72468 - BiochemistrybioRxivPreprint
Rational evolution of a recombinant DNA polymerase for efficient incorporation of unnatural nucleotides by dual-site boosting
R. Cao, L. Zhai, Q. Xie…·W. Lyu
The paper improves a DNA polymerase's efficiency for unnatural nucleotide incorporation by identifying two key mutations through machine learning and mechanistic analysis.
DOI 10.1101/2022.02.27.482192 - ImmunologybioRxiv
Omicron booster in ancestral strain vaccinated mice augments protective immunities against both the Delta and Omicron variants
L. Jia, Y. Zhou, S. Li…·C. Qiu
This study shows that an Omicron-matched DNA vaccine booster enhances cross-reactive immunity against Delta and Omicron variants in mice compared to an ancestral strain booster.
DOI 10.3389/fimmu.2022.897879 - BiochemistrybioRxivPreprint
Biochemical analysis challenging Western blot analysis as validation step for antibodies intended for ELISA and immunohistochemistry
Y. Zhang, W. Zhang, M. Yang, j. zhang
The study compares antigen-antibody interactions at different states using QDB, showing conformational epitopes dominate interactions, challenging Western blot as a validation tool for IHC and ELISA antibodies.
DOI 10.1101/2022.02.14.480459 - Plant BiologyNew PhytologistPeer-reviewed
Induced ligno-suberin vascular coating and tyramine-derived hydroxycinnamic acid amides restrict Ralstonia solanacearum colonization in resistant tomato roots
A. Kashyap, M. Capellades, W. Zhang…·N. S. Coll
This study identifies structural barriers in resistant tomato roots that restrict Ralstonia solanacearum colonization and slow disease progression.
DOI 10.1111/nph.17982 - ImmunologybioRxivPreprint
FoxP3 can fold into two distinct dimerization states with divergent functional implications for T cell homeostasis
F. Leng, W. Zhang, R. Ramirez…·S. Hur
This study shows FoxP3 can form two dimerization states, with head-to-head dimerization supporting function and swap-dimerization impairing it.
DOI 10.1101/2022.02.08.479534 - ImmunologybioRxivPreprint
Omicron BA.2 specifically evades broad sarbecovirus neutralizing antibodies
Y. Cao, A. Yisimayi, F. Jian…·X. S. Xie
This study shows that BA.2 causes stronger antibody evasion than BA.1, particularly in SARS convalescents, and identifies key mutations responsible for this escape.
DOI 10.1101/2022.02.07.479349 - ImmunologybioRxiv
IgD+ Age-Associated B cells are the progenitors of the main T-independent B cell response to infection that generates protective Ab and can be induced by an inactivated vaccine in the aged
O. A. Kugler-Umana, W. Zhang, Y. Kuang…·S. L. Swain
The paper identifies IgD+CD21-CD23- age-associated B cells as precursors of infection-induced B cells in aged mice, which provide protective antibody responses and can be induced by inactivated vaccines.
DOI 10.1111/acel.13705 - MicrobiologybioRxivPreprint
New efficient intercellular spread mode of respiratory syncytial virus contributes to neutralization escape and persistence
W. Zhang, X. Lin, L.-J. Zhang…·Z.-Z. Zheng
The paper identifies a new intercellular spread mode of RSV that is virion-independent and antibody-insensitive, contributing to immune escape and viral persistence.
- MicrobiologybioRxiv
HIV-2 Immature Particle Morphology Provides Insights into Gag Lattice Stability and Virus Maturation
N. Talledge, H. Yang, K. Shi…·W. Zhang
This study determines the 3D structure of HIV-2 immature Gag lattice using cryo-EM and identifies structural features critical for particle release and infectivity.