Author
Falk Butter
Institute of Molecular BiologyORCID 0000-0002-7197-7279Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2018-2026 · peak 8/yrCo-Author Collaboration Network
10 top collaborators · 16 mutual co-author links31 papers
Recent·Most cited
- Molecular BiologyEMBO ReportsPeer-reviewed
An Evolutionarily Conserved N-terminal Domain of RRF-3 Governs GTSF-1 Binding in Nematodes
Shamitha Govind, Sebastian Ruppert, Joseph Kirangwa…·René F. Ketting
The paper shows that GTSF-1 binds RRF-3 in nematodes, a conserved interaction essential for 26G-RNA production and fertility.
DOI 10.1038/s44319-026-00914-1 - Molecular BiologyNucleic Acids ResearchPeer-reviewed
ZNF512B associates with mitotic spindles, regulates metaphase exit and is crucial for stem cell differentiation
Lena W. Paasche, Nadine Daus, Johannes J Groos…·Sandra B. Hake
This study identifies ZNF512B as a spindle-associated protein that regulates metaphase exit and stem cell differentiation, independent of its zinc finger domains and NuRD complex interaction.
DOI 10.1093/nar/gkag802 - Plant BiologybioRxivPreprint
Identification and binding-site mapping of RNA-binding proteins interacting with microRNA precursors in Arabidopsis
Andreas R. Winkel, Valentin W. Bitterer, Martin Lewinski…·Tino Köster
The paper identifies RNA-binding proteins interacting with pri-miRNAs in Arabidopsis and develops an improved iCLIP protocol to map their binding sites.
DOI 10.64898/2026.07.28.741191 - Molecular BiologyNature CommunicationsPeer-reviewed
A SET domain-containing protein and HCF-1 maintain transgenerational epigenetic memory
Chenming Zeng, Giulia Furlan, Miguel Vasconcelos Almeida…·Eric Alexander Miska
This study identifies SET-24, a catalytically inactive SET domain protein in C. elegans, as essential for maintaining transgenerational epigenetic memory through its interaction with HCF-1 and regulation of H3K4me3 levels.
5 citationstop 2% - GeneticsbioRxivPreprint
Crosstalk between and developmental dynamics of C. elegans Argonaute proteins
Ann‐Sophie Seistrup, Emily Nischwitz, Falk Butter, René F. Ketting
The paper investigates the developmental dynamics and crosstalk between WAGO-1 and WAGO-3 in C. elegans, showing distinct regulatory roles and complex interactions with 22G-RNAs and 26G-RNAs.
1 citation - Molecular BiologybioRxivPreprint
Bidirectional control of a metabolic transition by the GID ubiquitin ligase
Ka-Yiu Edwin Kong, Christian Ochs, Cécile Debarnot…·Anton Khmelinskii
This study identifies Gid11 as a substrate receptor for the GID ubiquitin ligase in budding yeast, revealing its role in regulating metabolic transitions by targeting glycolytic factors during ethanol metabolism.
3 citations - Cell BiologyNucleic Acids ResearchPeer-reviewed
ERH regulates type II interferon immune signaling through post-transcriptional regulation of JAK2 mRNA
Adrian Söderholm, Milica Vunjak, Melanie de Almeida…·Gijs A. Versteeg
The paper identifies ERH and associated factors as post-transcriptional regulators of JAK2 mRNA maturation, essential for IFNγ signaling and innate immunity.
- Cell BiologybioRxivPreprint
Beyond a Linear Structure: The Tubular Organization of the Tripartite Attachment Complex and the Functional Role of TAC53
Clirim Jetishi, Salome Aeschlimann, Bernd Schimanski…·Torsten Ochsenreiter
This paper identifies TAC53 as a novel component of the Tripartite Attachment Complex (TAC) in Trypanosoma brucei, revealing its tubular architecture and role in mitochondrial DNA segregation.
1 citation - Evolutionary BiologyMolecular Biology and EvolutionPeer-reviewed
Transposable elements drive regulatory and functional innovation of F-box genes
Miguel Vasconcelos Almeida, Zixin Li, Pedro Rebelo‐Guiomar…·Eric Alexander Miska
The paper identifies recurrent capture of transposable element domains by F-box genes across eukaryotes and shows their functional integration into host regulatory networks.
5 citations - Evolutionary BiologyGenome biologyPeer-reviewed
Dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes
Miguel Vasconcelos Almeida, Moritz Blumer, Chengwei Ulrika Yuan…·Eric Alexander Miska
The paper investigates the dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes, revealing expanded piwil1 genes and divergent piRNA-producing loci.
7 citations - MicrobiologyFrontiers in Cellular and Infection MicrobiologyPeer-reviewed
The histone methyltransferase DOT1B is dispensable for stage differentiation and macrophage infection in Leishmania mexicana
Nicole Eisenhuth, Elisa Theres Rauh, Melina Mitnacht…·Christian J. Janzen
This study shows that DOT1B is not essential for differentiation or macrophage infection in Leishmania mexicana, contrasting its essential role in Trypanosoma brucei.
- Molecular BiologyGenome ResearchPeer-reviewed
ISWI1 complex proteins facilitate developmental genome editing in Paramecium
Aditi D. Singh, Lilia Häußermann, Christiane Emmerich…·Estienne Carl Swart
The paper identifies ICOP1 and ICOP2 as proteins interacting with ISWI1 that are essential for chromatin remodeling and DNA elimination during somatic genome development in Paramecium.
- MicrobiologyScientific ReportsPeer-reviewed
TelAP2 links TelAP1 to the telomere complex in Trypanosoma brucei
Nadine Weisert, Verena Majewski, Laura Hartleb…·Falk Butter
The paper identifies TelAP2 as an interacting partner of TelAP1 in the telomere complex of Trypanosoma brucei and shows that TelAP1 requires this interaction to associate with telomeric proteins.
6 citations - Molecular BiologyNucleic Acids ResearchPeer-reviewed
ZNF512B binds RBBP4 via a variant NuRD interaction motif and aggregates chromatin in a NuRD complex-independent manner
Tim Marius Wunderlich, Chandrika N. Deshpande, Lena W. Paasche…·Sandra B. Hake
This study identifies ZNF512B as a repressor of gene expression that interacts with the NuRD complex via a conserved motif and can cause chromatin aggregation independently of NuRD.
8 citations - Plant BiologyBMC Plant BiologyPeer-reviewed
Revealing the Arabidopsis AtGRP7 mRNA binding proteome by specific enhanced RNA interactome capture
Marlene Reichel, Olga Schmidt, Mandy Rettel…·Dorothee Staiger
The paper identifies proteins interacting with the AtGRP7 mRNA in Arabidopsis using enhanced RNA interactome capture, revealing ALBA proteins as binders.
7 citations - Molecular BiologyiSciencePeer-reviewed
Msc1 is a nuclear envelope protein that reinforces DNA repair in late mitosis.
Sara Medina‐Suárez, Jessel Ayra‐Plasencia, Lara Pérez‐Martínez…·Félix Machín
The paper identifies Msc1 as a nuclear envelope protein that enhances DNA repair in late mitosis by supporting homologous recombination.
8 citations - Molecular BiologyNaturePeer-reviewed
piRNA processing by a trimeric Schlafen-domain nuclease
Nadezda Podvalnaya, Alfred W. Bronkhorst, Raffael Lichtenberger…·René F. Ketting
The paper identifies PUCH, a trimeric Schlafen-domain nuclease that initiates piRNA processing in C. elegans by cleaving 5-end piRNA precursors, revealing a novel RNA endonuclease mechanism.
47 citationstop 2% - Developmental BiologyPLoS GeneticsPeer-reviewed
The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline
Elisabeth A. Marnik, Miguel Vasconcelos Almeida, Patricia Giselle Cipriani…·Dustin L. Updike
The paper identifies LOTR-1, a C. elegans protein with LOTUS and Tudor domains, which interacts with ZNFX-1 to regulate small RNA processing in the germline.
25 citations - GenomicsGenome ResearchPeer-reviewed
Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis
Alexandra Dallaire, Bethan F. Manley, Maya Wilkens…·Eric Alexander Miska
The paper examines transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis, finding evidence of TE activity and epigenomic regulation.
56 citations - Molecular BiologymBioPeer-reviewed
A DOT1B/Ribonuclease H2 protein complex is involved in R-loop processing, genomic integrity and antigenic variation in Trypanosoma brucei
Nicole Eisenhuth, Tim Vellmer, Elisa T. Rauh…·Christian J. Janzen
11 citations - GeneticsPLoS GeneticsPeer-reviewed
Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescence
Tina Wagner, Lara Pérez‐Martínez, René Schellhaas…·Brian Luke
This study identifies chromatin modifiers and recombination factors essential for telomere folding in yeast, which is lost during replicative senescence.
- Molecular BiologybioRxivPreprint
Identification of MAZ as a novel transcription factor regulating erythropoiesis
Darya Deen, Falk Butter, Michelle L. Holland…·Douglas Vernimmen
This study identifies MAZ as a novel transcription factor regulating erythropoiesis by binding to the -globin gene promoter and interacting with GATA1-bound enhancers, with knockdown impairing differentiation and genetic variants linked to erythroid traits.
DOI 10.1101/2020.05.10.087254 - GeneticsbioRxivPreprint
The RNA Polymerase II core subunit RPB-9 directs transcriptional elongation at piRNA loci in Caenorhabditis elegans
Ahmet Can Berkyurek, Giulia Furlan, Lisa Lampersberger…·Eric Alexander Miska
This study identifies RPB-9 as essential for piRNA-mediated silencing in C. elegans by promoting transcriptional elongation/termination at piRNA loci.
DOI 10.1101/2020.05.01.070433 - Molecular BiologybioRxivPreprint
The IDR-containing protein PID-2 affects Z granules and is required for piRNA-induced silencing in the embryo
Maria Placentino, António Miguel de Jesus Domingues, Jan Schreier…·René F. Ketting
The paper identifies PID-2 and related proteins as essential for establishing and maintaining RNAe in C. elegans embryos through interactions with eTudor domain proteins and proteolysis.
- Molecular BiologybioRxivPreprint
The m6A reader Ythdf restricts axonal growth in Drosophila through target selection modulation of the Fragile X mental retardation protein
Alessia Soldano, Lina Worpenberg, Chiara Paolantoni…·Jean‐Yves Roignant
This study shows that the m6A reader Ythdf limits axonal growth in Drosophila by modulating Fmr1 target selection.
2 citations - Molecular BiologybioRxiv
PETISCO is a novel protein complex required for 21U RNA biogenesis and embryonic viability
Ricardo J. Cordeiro Rodrigues, António Miguel de Jesus Domingues, Svenja Hellmann…·René F. Ketting
The paper identifies PETISCO as a novel protein complex essential for 21U RNA biogenesis and embryonic viability in C. elegans, revealing its distinct roles from PID-1.
51 citations - Molecular BiologyDevelopmental CellPeer-reviewed
Tdrd6a regulates the aggregation of Buc into functional subcellular compartments that drive germ cell specification
Elke F. Roovers, Lucas J. T. Kaaij, Stefan Redl…·René F. Ketting
This study identifies Tdrd6a as a regulator of Buc protein aggregation, which is essential for forming subcellular compartments that drive germ cell specification in zebrafish.
88 citations - Molecular BiologybioRxivPreprint
Genome-wide rules of nucleosome phasing
Sandro Baldi, Dhawal S. Jain, Lisa Harpprecht…·Peter B. Becker
The paper identifies genome-wide phased nucleosome arrays in Drosophila, revealing a novel sequence motif and the role of the zinc finger protein Phaser in their formation.
1 citation