Author
Y. Zhang
Beijing University of Technology
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2022-2022 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 13 mutual co-author links1,042 papers
Recent·Most cited
- MicrobiologybioRxiv
BysR, a LysR-type Pleiotropic Regulator, Controls Production of Occidiofungin by Activating the LuxR-type transcriptional regulator AmbR1 in Burkholderia sp. JP2-270
W. Lijuan, L. Tang, Y. He…·Z. E
This paper identifies BysR as a LysR-type regulator that activates ambR1 to control occidiofungin production in Burkholderia sp. JP2-270 and reveals its broader regulatory role in metabolism and motility.
DOI 10.1128/spectrum.02684-22 - BiochemistrybioRxiv
Anellovirus Structure Reveals a Mechanism for Immune Evasion
K. A. Swanson, S.-H. Liou, S. Delagrave…·J. Pitts
This paper determines the structure of an anellovirus, revealing how its unique surface features enable immune evasion by hiding conserved epitopes and exposing diverse ones as decoys.
DOI 10.1038/s41467-024-51064-8 - PathologybioRxivPreprint
CircRNA-regulated immune response of Asian honey bee workers to microsporidian infection
Z. Zhu, J. Wang, X. Fan…·R. Guo
This study identifies circRNAs in Asian honey bee midguts infected with Nosema ceranae and shows their role in regulating immune responses through miRNA targeting and pathway involvement.
DOI 10.1101/2022.06.30.498258 - Plant BiologybioRxivPreprint
Leaf specific overexpression of a mitochondrially-targeted glutamine synthetase in tomato increased assimilate export resulting in earlier fruiting and elevated yield
J. G. Vallarino, S. Shameer, Y. Zhang…·A. R. Fernie
This study shows that overexpressing mitochondrial-targeted glutamine synthetase in tomato leaves increases assimilate export, leading to earlier flowering and higher yield.
DOI 10.1101/2022.06.28.497938 - BiochemistrybioRxivPreprint
Single-shot Volumetric Chemical Imaging by Mid- Infrared Photothermal Fourier Light Field Microscopy
y. zhang, D. Jia, Q. Yang…·J.-X. Cheng
This paper introduces MIP-FLF microscopy to enable fast, volumetric infrared spectroscopic imaging of living cells and organisms, revealing lipid metabolism changes in drug-resistant pancreatic cancer cells.
DOI 10.1101/2022.06.24.497516 - Cell BiologybioRxiv
Distinct roles of Nrf1 and Nrf2 in monitoring the reductive stress response to dithiothreitol (DTT)
R. Wufur, Z. Fan, J. Yuan…·Y. Zhang
This paper investigates the distinct roles of Nrf1 and Nrf2 in the reductive stress response to DTT, showing differential regulation of redox and ER stress defense genes.
DOI 10.3390/antiox11081535 - Cell BiologybioRxivPreprint
A self-blinking DNA probe for 3D superresolution imaging of native chromatin
Y. ZHENG, S. Ye, S. Li…·D. Yang
This paper introduces a self-blinking DNA probe for 3D superresolution imaging of native chromatin in live cells, revealing chromatin organization and decompaction dynamics.
- Plant BiologybioRxiv
Cell wall extensin arabinosylation is required for root directional response to salinity
Y. Zou, N. Gigli-Bisceglia, E. van Zelm…·C. Testerink
The paper identifies a genetic locus associated with root bending in response to salinity, showing that extensin arabinosylation is required for directional root responses to salt.
DOI 10.1093/plcell/koae135 - Cancer BiologybioRxiv
Arginase 1 is a key driver of immune suppression in pancreatic cancer
R. E. Menjivar, Z. C. Nwosu, W. Du…·M. di Magliano
This study shows that Arginase 1 suppresses immune responses in pancreatic cancer by inhibiting T cell activation, and targeting it enhances immunotherapy effectiveness.
- MicrobiologybioRxivPreprint
On-target inhibition of Cryptosporidium parvum by nitazoxanide (NTZ) and paclitaxel (PTX) validated using a novel MDR1-transgenic host cell model and algorithms to quantify on/off-target rates
B. Yang, Y. Yan, D. Wang…·G. Zhu
The paper validates on-target and off-target effects of anti-Cryptosporidium drugs using a novel MDR1-transgenic host cell model and algorithms to quantify drug action contributions.
DOI 10.1101/2022.06.19.496759 - Evolutionary BiologybioRxiv
Limited role of generation time changes in driving the evolution of mutation spectrum in humans
Z. Gao, Y. Zhang, N. Cramer…·P. Moorjani
The paper examines how changes in generation time affect human mutation spectra, finding that such changes cannot fully explain observed mutation patterns, suggesting other factors are involved.
DOI 10.7554/elife.81188 - Cell BiologybioRxiv
eccDNA purification, full-length sequencing, and genomic mapping
This paper introduces a new eccDNA purification method and a full-length sequencing approach to improve eccDNA analysis and mapping.
DOI 10.1038/s41596-022-00783-7 - MicrobiologybioRxivPreprint
A library of promoter-gfp fusion reporters for studying systemic expression pattern of cyclic-di-GMP metabolism-related genes in Pseudomonas aeruginosa
D. Liu, D. Wang, Q. Wei…·L. Z. Ma
The paper constructs a promoter-GFP fusion reporter library to study the systemic expression patterns of 41 c-di-GMP metabolism-related genes in Pseudomonas aeruginosa under various growth conditions.
DOI 10.1101/2022.06.15.496363 - Evolutionary BiologybioRxivPreprint
Lineage-specific genes are clustered with allorecognition loci and respond to GxE factors regulating the switch from asexual to sexual reproduction in Neurospora
Z. Wang, Y. Wang, T. Kasuga…·J. P. Townsend
The paper identifies lineage-specific genes (LSGs) in Neurospora crassa that cluster with allorecognition loci and respond to environmental factors regulating the switch from asexual to sexual reproduction.
DOI 10.1101/2022.06.10.495464 - ImmunologybioRxiv
Regulation of pDC Fate Determination by Histone Deacetylase 3
Y. Zhang, Z. He, W. Lai…·L. Wu
This study shows HDAC3 is essential for pDC development and hematopoietic progenitor homeostasis, with HDAC3 repressing cDC1-associated genes to promote pDC differentiation.
DOI 10.7554/elife.80477 - BiophysicsbioRxiv
Metallo-Supramolecular Branched Polymer Protects Particles from Air-water Interface in Single-Particle Cryo-Electron Microscopy
Y. Xu, Y. Qin, L. Wang…·S. Dang
This study introduces a metallo-supramolecular branched polymer to improve particle distribution in single-particle cryo-EM by preventing air-water interface damage and preferred orientation.
DOI 10.1038/s42003-023-05752-8 - Plant BiologyPlant PhysiologyPeer-reviewed
Shade-induced transcription of PIF-Direct-Target Genes precedes H3K4-trimethylation chromatin modification rises
R. H. Calderon, J. Dalton-Roesler, Y. Zhang, P. H. Quail
The paper shows that shade-induced transcription of PIF-Direct-Target Genes occurs before H3K4me3 chromatin modification increases, suggesting H3K4me3 may buffer rather than cause shade-induced gene expression.
DOI 10.1093/plphys/kiac282 - Plant BiologybioRxiv
Generation of inheritable A-to-G transitions using adenine base editing and NG-PAM Cas9 in Arabidopsis thaliana
E. Chae, Y. Y. Tan, Y. Y. Liew…·S.-T. Kim
The paper develops adenine base editors in Arabidopsis thaliana that can induce inheritable A-to-G mutations in non-canonical PAM contexts with high efficiency.
DOI 10.1094/mpmi-10-24-0127-ta - BiophysicsbioRxiv
Survival intravascular photoacoustic imaging of lipid-rich plaque in cholesterol fed rabbits
Y. Zhang, E. Taylor, N. Huang…·J. Cheng
This study demonstrates survival intravascular photoacoustic imaging of lipid-rich atherosclerotic plaques in a rabbit model using MRI-guided IVPA catheter, validated by histology.
- ImmunologybioRxiv
Protective human anti-poxvirus monoclonal antibodies are generated from rare memory B cells isolated by multicolor antigen tetramers
X. Gu, Y. Zhang, W. Jiang…·M. Fang
The paper isolates rare memory B cells from vaccinated individuals to generate anti-poxvirus monoclonal antibodies, identifying one with high efficacy against viral infection.
DOI 10.3390/vaccines10071084 - Plant BiologybioRxiv
N-hydroxy pipecolic acid methyl ester is involved in Arabidopsis immunity
L. Mohnike, W. Huang, B. Worbs…·I. Feussner
The paper identifies novel NHP metabolites in Arabidopsis and shows that their methyl ester form can rescue a biosynthesis mutant's disease susceptibility.
DOI 10.1093/jxb/erac422 - MicrobiologyCarbohydrate PolymersPeer-reviewed
An oligosaccharide analog exhibited antifungal activity by misleading cell wall organization via targeting PHR transglucosidases
This paper shows that a chitosan oligosaccharide analog disrupts fungal cell wall organization by targeting PHR transglucosidases, leading to antifungal activity and synergy with existing fungicides.
DOI 10.1016/j.carbpol.2022.119253 - Cancer BiologyCancer CellPeer-reviewed
Mesothelial cell-derived antigen-presenting cancer-associated fibroblasts induce expansion of regulatory T cells in pancreatic cancer
H. Huang, Z. Wang, Y. Zhang, R. A. Brekken
The paper identifies mesothelial cell-derived antigen-presenting CAFs in pancreatic cancer that induce regulatory T cells through antigen-specific interactions.
- MicrobiologybioRxiv
Human LAMP1 accelerates Lassa virus fusion and potently promotes fusion pore dilation upon forcing viral fusion with non-endosomal membrane
Y. Zhang, J. Carlos de la Torre, G. B. Melikyan
This study investigates the role of human LAMP1 in LASV fusion, showing it accelerates pore formation but only modestly increases infection, with enhanced pore dilation when fusion is forced at the plasma membrane.
DOI 10.1371/journal.ppat.1010625 - Plant BiologybioRxiv
Chemical genetic screening identifies nalacin as an inhibitor of GH3 amido synthetase for auxin conjugation
K. Jiang, Y. Xie, Y. Zhu…·H. Guo
The paper identifies nalacin as an inhibitor of GH3 amido synthetase, which regulates auxin conjugation in plants, with potential applications in agriculture and research.
DOI 10.1073/pnas.2209256119 - BiochemistrybioRxiv
An Engineered Amber-Emitting Nano Luciferase and Its Use for Immunobioluminescence Imaging in Vivo
Y. Xiong, Y. Zhang, Z. Li…·H. Ai
The paper develops a red-shifted NanoLuc variant (QLuc) and uses it for in vivo immunobioluminescence imaging to improve deep-tissue visualization in mice.
- ImmunologybioRxivPreprint
Reduced Neutralization of SARS-CoV-2 Omicron Variant in Sera from SARS-CoV-1 Survivors after 3-dose of Vaccination
X. Zhao, D. Chen, X. Hao…·R. Jin
This study shows that SARS-CoV-1 survivors vaccinated with ZF2001 have reduced neutralization against SARS-CoV-2 Omicron compared to other variants.
DOI 10.1101/2022.05.21.492903 - Cell BiologybioRxiv
An apical protein, Pcr2, is required for persistent movement by the human parasite Toxoplasma gondii
J. M. Lopez, I. F. Tengganu, J. Liu…·K. Hu
This study identifies Pcr2 as a critical protein for movement and invasion in Toxoplasma gondii, showing that its absence impairs egress and tissue destruction.
DOI 10.1371/journal.ppat.1010776 - BiophysicsbioRxiv
Self-organized canals enable long range directed material transport in bacterial communities
Y. Li, S. Liu, Y. Zhang…·Y. Wu
This study identifies self-organized canals in bacterial colonies that enable long-range directed transport of cells and vesicles, driven by biosurfactant-mediated fluid flows.
DOI 10.7554/elife.79780