Author
H. Yuan
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2017-2024 · peak 8/yrCo-Author Collaboration Network
10 top collaborators · 12 mutual co-author links35 papers
Recent·Most cited
O-GlcNAcylation of the intellectual disability protein DDX3X exerts proteostatic cell cycle control
D. M. F. van Aalten, C. W. Mitchell, H. Yuan, F. Authier, M. Sonderstrup-Jensen, A. T. Ferenbach, A. M. d'Alessio
The paper identifies O-GlcNAcylation of DDX3X as a regulator of the G1/S-phase transition and shows its role in cell cycle control and neurogenesis in OGT-CDG.
bioRxiv · Feb 28, 2024Cell Biology
Insight into the gut virome in patients with multiple sclerosis
S. C. Bokoliya, J. T. Russell, H. Yuan, Z. Xia, L. Piccio, Y. Zhou
This study examines the gut virome in MS patients, finding reduced diversity and specific taxonomic changes compared to healthy controls.
bioRxiv · Nov 17, 2023 · PreprintMicrobiology
Paternal genomic resources from the YanHuang cohort suggested a Weakly-Differentiated Multi-source Admixture model for the formation of Hans founding ancestral lineages
Z. Wang, M. Wang, K. Liu, H. Yuan, S. Duan, Y. Liu, L. Luo, X. Jiang, S. Chen, L. Wei, R. Tang, L. Hu, J. Chen, X. Li, Q. Yang, , G. He
The paper analyzes paternal genomic data from the YanHuang cohort to propose a Weakly-Differentiated Multi-source Admixture model for the formation of Han Chinese ancestral lineages.
bioRxiv · Nov 8, 2023Evolutionary Biology
Small Molecule Screen Identifies Pyrimethamine as an Inhibitor of NRF2-driven Esophageal Hyperplasia
C. Paiboonrungruang, Z. Xiong, D. Lamson, Y. Li, B. Bowman, J. Chembo, C. Huang, J. Li, E. W. Livingston, J. E. Frank, V. Chen, Y. Li, B. Weissman, H. Yuan, K. P. Williams, , X. Chen
This study identifies pyrimethamine as an NRF2 inhibitor that suppresses esophageal hyperplasia in a mouse model and shows potential for clinical use in NRF2-high ESCC.
Redox Biology · Nov 1, 2023Peer-reviewedCancer Biology
High-throughput and in-depth analysis of plasma proteome by UV-assisted protein digestion, 5-plex labeling and MS-based high abundance protein removal method
L. Zhang, J. Liu, H. Yuan, Z. Wang, B. Qu, W. Zhang, Z. Liang, L. Wang, Y. Zhang
This study develops a high-throughput plasma proteome analysis workflow using UV-assisted digestion, 5-plex labeling, and MS-based high abundance protein removal to improve quantification of low-abundance proteins.
bioRxiv · Oct 20, 2023 · PreprintBiochemistry
Alternating Polarity as a Novel Strategy for Cultivating Electro-Methanogenic Microbial Communities Capable of Robust Biogas Production
S. Yao, C. S. Swanson, C. Zhang, Q. He, H. Yuan
This paper develops an alternating polarity strategy to cultivate electro-methanogenic microbial communities, resulting in higher biogas production and structurally distinct communities.
bioRxiv · Aug 29, 2023 · PreprintEcology
Hybrid Modeling of Engineered Biological Systems through Coupling Data-Driven Calibration of Kinetic Parameters with Mechanistic Prediction of System Performance
This paper develops a hybrid modeling strategy that combines data-driven calibration with mechanistic prediction to improve performance prediction of engineered biological systems.
bioRxiv · Jun 14, 2023Microbiology
Combination of Polymeric Micelle Formulation of TGFβ Receptor Inhibitors and Paclitaxel Produce Consistent Response Across Different Mouse Models of TNBC
N. Vinod, D. Hwang, S. C. Fussell, T. C. Owens, O. C. Tofade, S. Copling, J. D. Ramsey, P. D. Radler, H. M. Atkins, E. E. Livingston, J. A. Ezzel, M. Sokolsky, H. Yuan, c. perou, A. Kabanov
This study combines polymeric micelle-formulated TGFβ receptor inhibitors with Paclitaxel to show consistent anti-tumor effects across multiple TNBC mouse models.
bioRxiv · Jun 14, 2023 · PreprintCancer Biology
Mammalian Esophageal Stratified Tissue Homeostasis is Maintained Distinctively by the Epithelial Pluripotent p63+Sox2+ and p63-Sox2+ Cell Populations
X. Yu, H. Yuan, Y. Yang, W. Zheng, X. Zheng, S.-H. Lu, W. Jiang, X. Yu
This study identifies two distinct cell populations, p63+Sox2+ and p63-Sox2+, that maintain esophageal tissue homeostasis through different roles in stemness, differentiation, and damage repair.
bioRxiv · Mar 22, 2023 · PreprintCell Biology
A stable reference human transcriptome and proteome as a standard for reproducible omics experiments
S. Lu, H. Lu, T. Zheng, H. Yuan, H. Du, Y. Gao, Y. Liu, X. Pan, W. Zhang, S. Fu, Z. Sun, J. Jin, Q.-Y. He, Y. Chen, G. Zhang
The paper establishes a stable human cell line as a reference for transcriptomic and proteomic studies, showing consistent results across generations and platforms.
bioRxiv · Nov 16, 2022 · PreprintCell Biology
Rapid reversible osmoregulation of cytoplasmic biomolecular condensates of human interferon-α-induced antiviral MxA GTPase
This study shows that MxA GTPase condensates rapidly disassemble and reassemble in response to osmotic changes, maintaining antiviral activity during hypoosmolar conditions.
bioRxiv · Aug 30, 2022Biochemistry
Synthetic fibrous hydrogels as a platform to decipher cell-matrix mechanical interactions
H. Yuan, K. Liu, M. Condor, J. Barrasa-Fano, B. Louis, J. Vandaele, P. de Almeida, Q. Coucke, W. Chen, E. Oosterwijk, C. Xing, H. Van Oosterwyck, P. H. J. Kouwer, S. Rocha
This study uses synthetic fibrous hydrogels to investigate cell-matrix mechanical interactions and their impact on cellular behavior.
bioRxiv · Aug 24, 2022 · PreprintBiophysics
Modulation of the gut microbiome by novel synthetic glycans for the production of propionate and the reduction of cardiometabolic risk factors
Y. A. Millet, J. Meisner, J. Tan, A. Jose, E. Humphries, K. J. Miller, C. Bayne, M. McComb, M. Giuggio, C. M. Konopnicki, D. B. Belanger, L. Li, H. Yuan, M. Rosini, H. Luong, , J. E. van Hylckama Vlieg
This paper identifies a synthetic glycan, KB39, that increases propionate production by the gut microbiome and reduces cardiometabolic risk factors in mice.
bioRxiv · Apr 4, 2022 · PreprintMicrobiology
The gender gap in academic career achievements and the mediation effect of work-family conflict and partner support
This study examines how parenthood affects gender gaps in academic career achievements, finding that work-family conflict and partner support mediate these gaps.
bioRxiv · Mar 23, 2022 · PreprintScientific Communication & Education
Double NPY motifs at the N-terminus of Sso2 synergistically bind Sec3 to promote membrane fusion
M. Peer, H. Yuan, Y. Zhang, K. Korbula, P. J. Novick, G. Dong
This study identifies dual-site interactions between Sso2 and Sec3 that drive secretory vesicle fusion in yeast.
bioRxiv · Mar 11, 2022Biochemistry
Orchestration of Chlorophyll and Carotenoid Biosynthesis by ORANGE Family Proteins in Plant
L. Li, T. Sun, P. Wang, S. Lu, H. Yuan, Y. Yang, T. Fish, T. Thannhauser, J. Liu, M. Mazourek, B. Grimm
This study identifies ORANGE family proteins as regulators of chlorophyll and carotenoid biosynthesis in plants, showing their role in coordinating these pathways for photosynthesis and thermotolerance.
bioRxiv · Feb 8, 2022Plant Biology
Identification and Characterization of Stem Cells in Mammalian Esophageal Stratified Squamous Epithelia
Y. Yang, G. Deng, L. Qiao, H. Yuan, X. Yu, L. Xu, S.-H. Lu, W. Jiang, X. Yu
This study identifies and characterizes quiescent stem cells in the mammalian esophageal epithelium using scRNA-seq and DNA methylation profiling in rat models.
bioRxiv · Nov 11, 2021Cell Biology
An ex vivo culture model of kidney podocyte injury reveals mechanosensitive, synaptopodin-templating, sarcomere-like structures.
J. Shumeng, F. Alisafaei, H. Yuan, X. Peng, Y.-Y. Huang, J. H. Miner, G. M. Genin, H. Y. Suleiman
The paper develops an ex vivo culture model of kidney podocytes to study injury recovery, revealing mechanosensitive sarcomere-like structures that template synaptopodin.
bioRxiv · Nov 3, 2021Cell Biology
Bioequivalence Assessment of High-Capacity Polymeric Micelle Nanoformulation of Paclitaxel and Abraxane(R) in Rodent and Non-Human Primate Models Using a Stable Isotope Tracer Assay
D. Hwang, N. Vinod, S. L. Skoczen, J. D. Ramsey, K. S. Snapp, S. A. Montgomery, M. Wang, C. Lim, J. E. Frank, M. Sokolsky-Papkov, Z. Li, H. Yuan, S. T. Stern, A. V. Kabanov
Biomaterials · Nov 1, 2021Peer-reviewedPharmacology & Toxicology
Sequential CRISPR gene editing in human iPSCs charts the clonal evolution of leukemia
T. Wang, A. R. Pine, J. Wesely, H. Yuan, L. Zamparo, A. G. Kotini, C. S. Leslie, E. P. Papapetrou
This study uses sequential CRISPR gene editing in human iPSCs to model clonal evolution in AML, showing progressive dysplasia and identifying therapeutic vulnerabilities.
Cell Stem Cell · Jun 1, 2021Peer-reviewedCancer Biology
A contraction-reaction-diffusion model for circular pattern formation in embryogenesis
T. Zhao, Y. Sun, X. Li, M. Baghaee, Y. Wang, H. Yuan
This study introduces a contraction-reaction-diffusion model that generates circular patterns in embryogenesis by coupling mechanobiological factors with traditional reaction-diffusion equations.
bioRxiv · May 14, 2021Bioengineering
A potent bispecific nanobody protects hACE2 mice against SARS-CoV-2 infection via intranasal administration
X. Wu, L. Cheng, M. Fu, B. Huang, L. Zhu, S. Xu, H. Shi, D. Zhang, H. Yuan, W. Nawaz, P. Yang, Q. Hu, Y. Liu, Z. Wu
Nb15-NbH-Nb15, a bispecific nanobody with a heterotrimeric configuration, showed potent neutralization of SARS-CoV-2 in vitro and provided complete protection against infection in hACE2 mice via intranasal administration.
bioRxiv · Feb 8, 2021Microbiology
Rapid spread of a symbiotic virus in a major crop pest following wide-scale adoption of Bt-cotton in China
K. Wu, Y. Xiao, P. Xu, K. Wilson, A. Bravo, M. Soberon, X. Yang, H. Yuan, M. Jin, W. Zheng, W. Li
The paper shows that Bt-cotton adoption in China increased the prevalence of a symbiotic virus in the cotton bollworm, enhancing its resistance to Bt-cotton.
bioRxiv · Feb 8, 2021Ecology
Species composition and dynamics of aphids and parasitoid wasps in maize fields in Northeastern China
h. yuan, Y. Zhang, M.-c. Zhao, J. Cheng, S. Liu
This study reports the first systematic analysis of aphid and parasitoid wasp species composition and dynamics in maize fields of Jilin Province, China, over two years.
bioRxiv · Oct 19, 2020Ecology
Brassinosteroids Suppress Ethylene Biosynthesis via Transcription Factor BZR1 in Pear and Apple Fruit
Y. Ji, Y. Qu, Z. Jiang, X. Su, P. Yue, X. Li, Y. Wang, H. Bu, H. Yuan, A. Wang
BR-activated BZR1 suppresses ACO1 activity and expression of ACO1 and ACS1a, reducing ethylene production during pear and apple fruit ripening.
bioRxiv · Feb 27, 2020 · PreprintPlant Biology
Quantitative Analysis of Tissue Secretome Reveals the Diagnostic and Prognostic Value of Carbonic Anhydrase II in Hepatocellular Carcinoma
X. Xing, H. Yuan, H. Liu, X. Tan, B. Zhao, Y. Wang, J. Ouayng, M. Lin, A. Huang, X.-L. Liu
This study uses iTRAQ proteomics to analyze the HCC secretome, identifying CA2 as a diagnostic and prognostic biomarker with potential therapeutic implications.
bioRxiv · Jan 15, 2020 · PreprintCancer Biology