Author
M. Yang
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Biology Disciplines
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2017-2024 · peak 22/yrCo-Author Collaboration Network
10 top collaborators · 33 mutual co-author links101 papers
Recent·Most cited
Genetic disruption of isocitrate dehydrogenase arrests the full development of sexual stage parasites in Plasmodium falciparum
M. Yang, H. Ke, J. M. Morrisey, M. W. Mather, A. B. Vaidya
This study shows that knocking out isocitrate dehydrogenase (IDH) in Plasmodium falciparum parasites arrests gametocyte development, similar to aconitase knockout, and suggests IDH as a potential target for malaria transmission control.
bioRxiv · Aug 5, 2022 · PreprintMicrobiology
Machine Learning Informs RNA-Binding Chemical Space
K. Yazdani, D. Jordan, M. Yang, C. R. Fullenkamp, T. E. H. Allen, R. T. Khan, J. S. Schneekloth
This study introduces ROBIN, a large RNA-binding small molecule library, and uses machine learning to model RNA-binding chemical space.
bioRxiv · Aug 1, 2022Biochemistry
Anti-apoptotic BH3-only proteins inhibit Bak
S. Ruehl, C. S. Guy, Z. Li, M. Yang, T. Moldoveanu, D. R. Green
The paper identifies BNIP5 and Bcl-G as anti-apoptotic BH3-only proteins that inhibit Bak activation, preventing apoptosis.
bioRxiv · Jul 24, 2022 · PreprintCell Biology
FOXA2 controls the anti-oxidant response in FH-deficient cells
C. Rogerson, M. Sciacovelli, L. A. Maddalena, L. Valcarcel-Jimenez, C. Schmidt, M. Yang, E. Ivanova, J. Kent, A. Mora, D. Cheeseman, J. S. Carroll, G. Kelsey, C. Frezza
This study identifies FOXA2 as a key transcription factor regulating the anti-oxidant response in FH-deficient cells, independent of NRF2, and highlights its role in metabolic rewiring.
bioRxiv · Jul 4, 2022Cancer Biology
A Novel Selective ERK1/2 Inhibitor, Laxiflorin B, Targets EGFR Mutation Subtypes in Non-small-cell Lung Cancer
C. Chiang, M. Zhang, J. Huang, J. Zeng, C. Chen, D. Pan, H. Yang, M. Yang, Q. Han, W. Zou, T. Xiao, Y. Zou, F. Yin, Z. Li, L. Zhu, D. Zheng
This study identifies Laxiflorin B, a novel ERK1/2 inhibitor, showing efficacy against EGFR mutant NSCLC through apoptosis induction and suppression of AREG/EREG.
bioRxiv · Jun 27, 2022Pharmacology & Toxicology
Fbxo7 promotes Cdk6 activity to inhibit PFKP and glycolysis in T cells.
R. Harris, M. Yang, C. Schmidt, S. Singh, A. Natarajan, C. Frezza, H. Laman
This study identifies Fbxo7's role in promoting Cdk6 activity to inhibit PFKP and glycolysis in T cells, revealing its impact on metabolism and viability.
Journal of Cell Biology · Jun 7, 2022Peer-reviewedCell Biology
HIRA loss transforms FH-deficient cells
L. Valcarcel-Jimenez, C. Rogerson, C. Yong, C. Schmidt, M. Yang, V. Harle, V. Offord, K. Wong, A. N. Mora, A. Speed, V. Caraffini, M. G. B. Tran, E. R. Maher, G. D. Stewart, S. Vanharanta, , C. Frezza
This study identifies HIRA depletion as a factor that enhances proliferation and invasion of Fh1-deficient cells, revealing a mechanism involving MYC activation and nucleotide metabolism.
bioRxiv · Jun 4, 2022Cancer Biology
Orchestration of alternative splicing regulates bone marrow mesenchymal stem cells fate during aging
Y. Xiao, G.-P. Cai, X. Feng, Q. Guo, Y. Huang, T. Su, C.-J. Li, X.-H. Luo, Y.-J. Zheng, M. Yang
This study identifies YBX1 deficiency causes mis-splicing in BMSCs, leading to senescence and bone loss, and shows Sciadopitysin can reverse this process.
bioRxiv · May 27, 2022 · PreprintCell Biology
Structural basis of a two-antibody cocktail exhibiting highly potent and broadly neutralizing activities against SARS-CoV-2 variants including diverse Omicron sublineages
X. Li, Y. Pan, Q. Yin, Z. Wang, S. Shan, L. Zhang, J. Yu, Y. Qu, L. Sun, F. Gui, J. Lu, Z. Jing, W. Wu, T. Huang, X. Shi, , X. Wang
This study identifies two broadly neutralizing antibodies against SARS-CoV-2 variants and shows their synergistic neutralization effect, supported by cryo-EM structures.
bioRxiv · May 27, 2022Biochemistry
Loss-of-function mutation in human Oxidation Resistance gene 1 disrupts the spatial-temporal regulation of histone arginine methylation in early brain development
X. Lin, W. Wang, M. Yang, N. Damseh, M. M. L. d. Sousa, F. Jacob, A. Lang, E. Kristiansen, M. Pannone, M. Kissova, R. Almaas, A. Kusnierczyk, R. Siller, M. Shahrour, M. Al-Ashhab, , M. Bjoras
This study identifies a loss-of-function mutation in OXR1 causing neurodevelopmental disorders and shows its role in regulating histone arginine methylation in brain organoids.
bioRxiv · May 24, 2022 · PreprintPathology
3'UTR-directed, kinase proximal mRNA decay inhibits C/EBPβ phosphorylation/activation to suppress senescence in tumor cells
J. Salotti, N. Asif, S. Basu, A. Das, M. Yang, B. Karim, K. Saylor, N. Martin, D. A. Scheiblin, S. Misra, B. Luke, T. Andresson, S. Lockett, L. Tessarollo, P. F. Johnson
This study identifies a mechanism where 3'UTR-directed mRNA decay inhibits C/EBPβ activation, suppressing senescence in tumor cells and promoting tumor progression.
bioRxiv · Mar 29, 2022Cancer Biology
Global Spatial Transcriptome of Macaque Brain at Single-Cell Resolution
A. Chen, Y. Sun, Y. Lei, C. Li, S. Liao, Z. Liang, F. Lin, N. Yuan, M. Li, K. Wang, M. Yang, S. Zhang, Z. Zhuang, J. Meng, Q. Song, , Zhang
The paper creates a 3-D cell type atlas of the monkey brain using single-cell spatial transcriptomics and identifies molecular markers for neocortical layers and subregions.
bioRxiv · Mar 23, 2022Cell Biology
Biochemical analysis challenging Western blot analysis as validation step for antibodies intended for ELISA and immunohistochemistry
Y. Zhang, W. Zhang, M. Yang, j. zhang
The study compares antigen-antibody interactions at different states using QDB, showing conformational epitopes dominate interactions, challenging Western blot as a validation tool for IHC and ELISA antibodies.
bioRxiv · Feb 14, 2022 · PreprintBiochemistry
Preclinical Pharmacokinetics and In Vitro Properties of GS-441524, A Potential Oral Drug Candidate for COVID-19 Treatment
A. Q. Wang, N. R. Hagen, E. C. Padilha, M. Yang, P. Shah, C. Z. Chen, W. Huang, P. Terse, P. Sanderson, W. Zheng, X. Xu
This study examines the preclinical pharmacokinetics and in vitro ADME properties of GS-441524, showing its stability across species and varying bioavailability, supporting its development as an oral drug candidate for COVID-19.
bioRxiv · Feb 7, 2022 · PreprintPharmacology & Toxicology
Novel MBLs inhibitors screened from FDA-approved drug library restore the susceptibility of carbapenems to NDM-1-harbouring bacteria
Y. Guo, H. Liu, M. Yang, R. Ding, Y. Gao, X. Niu, X. Deng, J. Wang, H. Feng, J. Qiu
The paper screens FDA-approved drugs to find inhibitors of NDM-1, restoring carbapenem efficacy against resistant bacteria.
bioRxiv · Jan 16, 2022Microbiology
Barley stripe mosaic virus γb protein targets thioredoxin h-type 1 to dampen SA-mediated antiviral defenses
Z. Jiang, X. Jin, M. Yang, Q. Pi, Q. Cao, Z. Li, Y. Zhang, X.-B. Wang, C.-G. Han, J.-L. Yu, D. Li
The paper shows that BSMV γb protein targets NbTRXh1 to reduce its reductase activity, impairing SA defense gene expression and enhancing viral movement.
bioRxiv · Jan 6, 2022Microbiology
Structural and functional characterizations of altered infectivity and immune evasion of SARS-CoV-2 Omicron variant
Z. Cui, P. Liu, N. Wang, L. Wang, K. Fan, Q. Zhu, K. Wang, R. Chen, R. Feng, Z. Jia, M. Yang, B. Zhu, W. Fu, T. Chu, L. Feng, , X. Wang
The paper characterizes structural and functional changes in the SARS-CoV-2 Omicron variant's Spike protein, identifying new immune escape sites and providing insights for vaccine development.
bioRxiv · Dec 29, 2021 · PreprintBiophysics
Biogenesis of a bacterial metabolosome for propanediol utilization
M. Yang, N. Wenner, G. Dykes, Y. Li, X. Zhu, Y. Sun, F. Huang, J. C. D. Hinton, L.-N. Liu
This study investigates the biogenesis of propanediol-utilization metabolosomes in bacteria, revealing both 'Shell first' and 'Cargo first' assembly pathways.
bioRxiv · Dec 9, 2021Microbiology
Direct Imaging and Identification of Proteoforms up to 70 kDa from Human Tissue
P. Su, J. P. McGee, K. R. Durbin, M. A. R. Hollas, M. Yang, E. K. Neumann, J. L. Allen, B. S. Drown, F. A. Butun, J. B. Greer, B. P. Early, R. T. Fellers, J. M. Spraggins, J. Laskin, J. M. Camarillo, , N. L. Kelleher
This paper introduces PiMS, a method that detects proteoforms up to 70 kDa in human tissue with high spatial resolution, identifying key metabolic enzymes in kidney tissue.
bioRxiv · Dec 7, 2021 · PreprintBiochemistry
Immune, endothelial and neuronal network map in human lymph node and spleen
S. Currlin, H. Nick, M. Jorgensen, J. Nick, M. Brusko, H. Hakimian, J. Penaloza-Aponte, N. Rodriguez, M. Medina-Serpas, M. Yang, R. Seifert, I. Kusmartseva, T. Brusko, K. Otto, A. Posgai, , M. A. Atkinson
The paper maps immune, endothelial, and neuronal networks in human spleen and lymph node using multiplex imaging, revealing novel cellular localization patterns.
bioRxiv · Oct 20, 2021 · PreprintImmunology
Macrophage Innate Training Induced by IL-4 and IL-13 Activation Enhances OXPHOS Driven Anti-Mycobacterial Responses
M. L. Lundahl, M. Mitermite, D. G. Ryan, S. Case, N. C. Williams, M. Yang, R. I. Lynch, E. Lagan, F. M. Lebre, A. L. Gorman, B. Stojkovic, A. P. Bracken, C. Frezza, F. J. Sheedy, E. M. Scanlan, , E. C. Lavelle
This study shows that IL-4 and IL-13 activation of macrophages induces protective innate memory against mycobacterial infection through enhanced OXPHOS-driven pro-inflammatory responses.
bioRxiv · Oct 12, 2021Immunology
Tuning the sensitivity of genetically encoded fluorescent potassium indicators through structure-guided and genome mining strategies
C. C. Torres Caban, M. Yang, C. Lai, L. Yang, F. Subach, B. O. Smith, K. D. Piatkevich, E. S. Boyden
The paper develops genetically encoded fluorescent potassium indicators with tunable binding affinities through structure-guided design and genome mining, showing varying Kd values in vitro and in cells.
bioRxiv · Oct 7, 2021Bioengineering
Streptococcus pneumoniae rapidly translocates from the nasopharynx through the cribriform plate to invade and inflame the dura
T. Audshasai, J. A. Coles, S. Panagiotou, S. Khandaker, H. E. Scales, M. Kjos, M. Baltazar, J. Vignau, J. M. Brewer, A. Kadioglu, M. Yang
This study shows Streptococcus pneumoniae rapidly translocates from the nose through the cribriform plate to the meninges without entering the bloodstream.
bioRxiv · Sep 28, 2021 · PreprintMicrobiology
Zika virus causes placental pyroptosis and associated adverse fetal outcomes by activating GSDME
Z. Zhao, Q. Li, U. Ashraf, M. Yang, W. Zhu, Z. Chen, S. Cao, J. Ye
This study shows that Zika virus causes placental pyroptosis via GSDME activation, leading to adverse fetal outcomes.
bioRxiv · Sep 21, 2021 · PreprintMicrobiology
Nitrogen partitioning between branched-chain amino acids and urea cycle enzymes sustains renal cancer progression
M. Sciacovelli, A. Dugourd, L. Valcarcel Jimenez, M. Yang, E. Nikitopoulou, A. S. Costa, L. Tronci, V. Caraffini, P. Rodrigues, C. Schmidt, D. G. Ryan, T. Young, V. Zecchini, S. H. Rossi, C. Massie, , C. Frezza
This study identifies metabolic reprogramming in renal cancer cells, showing how branched-chain amino acid catabolism and urea cycle enzymes support tumor progression and metastasis.
bioRxiv · Sep 17, 2021 · PreprintCancer Biology
Nanobody-Functionalized Cellulose for Capturing and Containing SARS-CoV-2
X. Sun, S. Yang, A. Al-Dossary, S. Broitman, Y. Ni, M. Yang, J. Li
This paper develops a cellulose-based method using nanobodies to capture and neutralize SARS-CoV-2 pseudoviruses, showing effectiveness against wildtype and D614G variants.
bioRxiv · Sep 1, 2021Bioengineering
Ribosomal protein L23 drives the metastasis of hepatocellular carcinoma via upregulating MMP9
J. Chen, F. Li, M. Yang, Y. Zhou, H. Deng, H. Zhou, S. Cheng, D. Zhang, X. He, L. Mai, Y. Chen
This study identifies ribosomal protein L23 as a driver of hepatocellular carcinoma metastasis by upregulating MMP9 expression and promoting tumor growth and metastasis in vivo.
bioRxiv · Jul 27, 2021Cancer Biology
Disruption of the TCA cycle reveals an ATF4-dependent integration of redox and amino acid metabolism
D. G. Ryan, M. Yang, H. A. Prag, G. R. Blanco, E. Nikitopoulou, M. Segarra-Mondejar, C. A. Powell, T. Young, N. Burger, J. L. Miljkovic, M. Minczuk, M. P. Murphy, A. Von Kriegsheim, C. Frezza
This study investigates the effects of TCA cycle inhibition on redox and amino acid metabolism, revealing ATF4-dependent metabolic rewiring and distinct responses between FH and SDH inhibition.
bioRxiv · Jul 27, 2021Biochemistry
Perinatal maternal chronic exposure to dibutyl phthalate promotes visceral obesity in adult female offspring
K. Zhou, R. Cheng, M. Yang, X. Shen, X. Luo, L. Ma, L. Xu, J. Zhang
This study shows that maternal exposure to dibutyl phthalate during pregnancy and lactation leads to increased visceral obesity in adult female offspring without affecting serum glucolipid levels or the PI3K/AKT pathway in muscle.
bioRxiv · Jul 27, 2021 · PreprintPharmacology & Toxicology