Topic · Genetics · Biochemistry, Genetics and Molecular Biology
Genetic and Kidney Cyst Diseases
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
463 papers
Convergence of autism proteins at the cilium
Elina Kostyanovskaya, Micaela C. Lasser, Belinda Wang, James Schmidt, Ethel Bader, Chad Buteo, Juan Arbelaez, Aria Rani Sindledecker, Kate E. McCluskey, Octavio Castillo, Sheng Wang, Jeanselle Dea, Kathryn A. Helde, J. Michael Graglia, Elise Brimble, , Helen Rankin Willsey
The paper shows autism genes converge at cilia, linking them to ciliary dysfunction and co-occurring conditions.
bioRxiv · Dec 5, 2024 · PreprintCell Biology
Membrane-bound Guanylyl Cyclase COP5/HKR1 changes ciliary beat pattern and biases cell steering during chemotaxis in Chlamydomonas reinhardtii
Alexis Strain, Nathan Kratzberg, Dan Vu, Emmaline Miller, Ken‐ichi Wakabayashi, Adam T. Melvin, Naohiro Kato
Scientific Reports · Dec 5, 2024Peer-reviewedMicrobiology
Structure of the ciliary tip central pair reveals the unique role of the microtubule-seam binding protein SPEF1
Thibault Legal, Ewa Joachimiak, Mireya Parra, Wang Peng, Amanda Tam, Corbin Steven Black, Mayukh Guha, Chau Anh Nguyen, Avrin Ghanaeian, Melissa Valente-Paterno, Gary J. Brouhard, Jacek Gaertig, Dorota Włoga, Khanh Huy Bui
The paper presents a high-resolution structure of the ciliary tip central pair in Tetrahymena thermophila and identifies proteins that stabilize microtubules.
Current Biology · Dec 4, 2024Peer-reviewedCell Biology
Koolen-de Vries Syndrome causal gene KANSL1 is required for motile ciliogenesis
James D. Schmidt, Ananya Terala, Kate E. McCluskey, Belinda Wang, Anna C. Pfalzer, Helen Rankin Willsey
This study shows that KANSL1 mutations cause ciliary defects in KdVS patients, linking the gene to ciliogenesis and neurodevelopmental features.
bioRxiv · Nov 14, 2024 · PreprintDevelopmental Biology
The Role of the Co-Chaperone DNAJB11 in Polycystic Kidney Disease: Molecular Mechanisms and Cellular Origin of Cyst Formation
Tilman Busch, Björn Neubauer, Lars Schmitt, Isabel Cascante, Luise Knoblich, Oliver Wegehaupt, Felix Schöler, Stefan Tholen, Alexis Hofherr, Christoph Schell, Oliver Schilling, Lukas Westermann, Michael Köttgen
This study investigates DNAJB11's role in atypical ADPKD, showing biallelic loss causes cystic kidney disease and identifying impaired PC1 cleavage as a potential mechanism.
The FASEB Journal · Nov 12, 2024Peer-reviewedMolecular Biology
Glutamylation imbalance leads to photoreceptor degeneration
Olivier Mercey, Sudarshan Gadadhar, Maria M. Magiera, Laura Lebrun, Corinne Kostic, Alexandre Moulin, Yvan Arsenijévic, Carsten Janke, Paul Guichard, Virginie Hamel
This study shows that glutamylation imbalance in photoreceptor cells leads to structural defects and degeneration, highlighting its role in maintaining outer segment architecture.
The EMBO Journal · Nov 11, 2024Peer-reviewedCell Biology
A synthetic method to assay polycystin ion channel biophysics
Megan J. Larmore, Orhi Esarte Palomero, Neha P. Kamat, Paul G. DeCaen
The paper introduces a synthetic method to assay polycystin ion channel biophysics and characterizes their functional properties.
eLife · Oct 28, 2024Peer-reviewedSynthetic Biology
Emx2 is an essential regulator of ciliated cell development across embryonic tissues
Thanh Khoa Nguyen, John-Michael Rodriguez, Hannah M. Wesselman, Rebecca A. Wingert
This study identifies Emx2 as essential for cilia development and renal lineage formation, showing its role in regulating prostaglandin biosynthesis through PGE2.
iScience · Oct 28, 2024Peer-reviewedDevelopmental Biology
Spatiotemporal dynamics of primary and motile cilia throughout lung development
Stephen B. Spurgin, Ange Michelle Nguimtsop, Fatima N. Chaudhry, Sylvia N. Michki, Jocelynda Salvador, M. Luisa Iruela‐Arispe, Jarod A. Zepp, Saikat Mukhopadhyay, Ondine B. Cleaver
This study investigates the spatiotemporal dynamics of primary and motile cilia during lung development, revealing distinct patterns in endothelial, epithelial, and mesenchymal cells.
bioRxiv · Oct 25, 2024 · PreprintDevelopmental Biology
Depletion of BBSome Subunits Alters Receptor Endocytosis and Promotes EMT via TGF-β Signaling
Carlos Solarat, J. Barra-Carneiro, S. Vila-Almuíña, Cristian Alvela, Pablo Barbeito, Margarita Soloshenko, Maria Schrøder Holm, Noor Gammoh, Søren T. Christensen, Diana Valverde
This study shows that BBS1 and BBS4 deficiencies disrupt receptor endocytosis and alter TGF-β signaling, leading to EMT and affecting autophagy in retinal epithelial cells.
bioRxiv · Oct 23, 2024 · PreprintMolecular Biology
Multi-omics profiling of mouse polycystic kidney disease progression at a single cell resolution
Yoshiharu Muto, Yasuhiro Yoshimura, Hao Wu, Monica Chang-Panesso, Nicolas Ledru, Owen M. Woodward, Patricia Outeda, Tao Cheng, Moe R. Mahjoub, Terry J. Watnick, Benjamin D. Humphreys
This study uses single-nucleus multi-omics to analyze mouse PKD progression, identifying cell-type-specific gene and epigenetic changes and conserved regulatory pathways between mouse and human.
Proceedings of the National Academy of Sciences · Oct 15, 2024Peer-reviewedGenomics
Circadian clock disruption and growth of kidney cysts in autosomal dominant polycystic kidney disease
Abeda Jamadar, Christopher J. Ward, Viji Remadevi, Meekha M. Varghese, Navjotsingh Pabla, Michelle L. Gumz, Reena Rao
This study shows that disrupting the circadian clock in kidney cells accelerates ADPKD progression by altering lipid metabolism.
Journal of the American Society of Nephrology · Oct 14, 2024Peer-reviewedMolecular Biology
Shared and unique consequences of Joubert Syndrome gene dysfunction on the zebrafish central nervous system
Alexandra R. Noble, Markus Masek, Claudia Hofmann, Arianna Cuoco, Tamara D. S. Rusterholz, Hayriye Özkoç, Nadja R. Greter, Ian G. Phelps, Nikita Vladimirov, Sepp Kollmorgen, Esther T. Stoeckli, Ruxandra Bachmann‐Gagescu
The paper investigates the effects of Joubert Syndrome gene dysfunction in zebrafish, finding altered brain cilia, changes in neuron-related gene expression, and abnormal swimming behavior despite normal brain structure.
Biology Open · Oct 14, 2024Peer-reviewedNeuroscience
Astrogliosis And Neuroinflammation Underlie Scoliosis Upon Cilia Dysfunction
Morgane Djebar, Isabelle Anselme, Guillaume Pézeron, Pierre‐Luc Bardet, Yasmine Cantaut-Belarif, Alexis Eschstruth, Diego López-Santos, Hélène Le Ribeuz, Arnim Jenett, Hanane Khoury, Joëlle Véziers, Caroline Parmentier, Aurélie Hirschler, Christine Carapito, Ruxandra Bachmann‐Gagescu, , Christine Vesque
This study identifies astrogliosis and neuroinflammation as pathogenic mechanisms underlying scoliosis in zebrafish caused by cilia dysfunction.
eLife · Oct 10, 2024Peer-reviewedDevelopmental Biology
Kinesin Autoinhibition Requires Elbow Phosphorylation
Guanghan Chen, Zhengyang Guo, Zhiwen Zhu, Shanshan Xie, Tianhua Zhou, Guangshuo Ou
This study shows that phosphorylation of the elbow region in kinesin OSM-3 regulates its autoinhibition, with phosphorylation mutants affecting cilia entry and motility.
bioRxiv · Oct 7, 2024 · PreprintCell Biology
TAOK2 Drives Opposing Cilia Length Deficits in 16p11.2 Deletion and Duplication Carriers
Amy Ferreccio, Sujin Byeon, Moira Cornell, Juan A. Osés-Prieto, Aditi Deshpande, Lauren A. Weiss, Alma L. Burlingame, Smita Yadav
The paper identifies TAOK2 as a regulator of primary cilium length in 16p11.2 CNV carriers, showing opposing effects in deletion and duplication cases.
bioRxiv · Oct 7, 2024 · PreprintNeuroscience
Activation of PIEZO1 Inhibits Kidney Cystogenesis
Qingfeng Fan, Mohamad Hadla, Zack Peterson, Grace Nelson, Hong Ye, Xiaofang Wang, Jean Marc Mardirossian, Peter C. Harris, Seth L. Alper, Y. S. Prakash, Arthur Beyder, Vicente E. Torres, Fouad T. Chebib
This study shows that activating PIEZO1 reduces cyst formation in kidney cells and ex vivo models, suggesting it could be a therapeutic target for ADPKD.
Kidney360 · Oct 2, 2024Peer-reviewedCell Biology
The Role of Cilia in the Development, Survival, and Regeneration of Hair Cells
Hope Boldizar, Amanda E. Friedman, Tess Stanley, María Padilla, Jennifer Galdieri, Arielle Sclar, Tamara M. Stawicki
This study shows that cilia disruption via IFT gene mutations increases hair cell apoptosis and reduces regeneration in zebrafish, but not development.
Biology Open · Sep 11, 2024Peer-reviewedNeuroscience
Computational Exploration of Protein Structure Dynamics and RNA structural Consequences of PKD1 Missense Variants: Implications in ADPKD Pathogenesis
Chandra Devi, Prashant Ranjan, Sonam Raj, Parimal Kumar Das
This study examines the structural and dynamic effects of PKD1 missense variants on RNA and protein levels using computational methods to understand their role in ADPKD pathogenesis.
3 Biotech · Aug 24, 2024Peer-reviewedGenetics
In-cell structural insight into the asymmetric assembly of central apparatus in mammalian sperm axoneme
Yun Zhu, Guoliang Yin, Linhua Tai, Binbin Wang, Yi Lu, Zhiyong Zhang, Su‐Ren Chen, Fei Sun
The paper solves the in-cell structure of mouse sperm central apparatus at sub-nanometer resolution and identifies proteins critical for its asymmetric assembly.
bioRxiv · Aug 6, 2024 · PreprintMolecular Biology
An epilepsy-associated CILK1 variant compromises KATNIP regulation and impairs primary cilia and Hedgehog signaling
Ana Limerick, Ellie A. McCabe, Jacob S. Turner, Kevin W. Kuang, David L. Brautigan, Yi Hao, Cheuk Ying Chu, Sean H. Fu, Sean Ahmadi, Wenhao Xu, Zheng Fu
This study shows that a CILK1 variant linked to epilepsy impairs primary cilia and Hedgehog signaling by disrupting KATNIP regulation in mouse cells.
Cells · Jul 26, 2024Peer-reviewedCell Biology
BMP4 regulates asymmetric Pkd2 distribution in mouse nodal immotile cilia and ciliary mechanosensing required for left-right determination
Takanobu A. Katoh, Tim Lange, Yoshiro Nakajima, Kenta Yashiro, Yasushi Okada, Hiroshi Hamada
Developmental Dynamics · Jul 10, 2024Peer-reviewedDevelopmental Biology
A short sequence targets transmembrane proteins to primary cilia
Viviana Macarelli, Edward C. Harding, David C. Gershlick, Florian T. Merkle
The paper identifies a short peptide sequence that efficiently targets transmembrane proteins to primary cilia across cell types and develops an image analysis pipeline for automated cilia measurement.
Cells · Jul 6, 2024Peer-reviewedCell Biology
Myocardin-related transcription factor drives epithelial fibrogenesis in polycystic kidney disease
Zsuzsanna Lichner, Mei Ding, Tarang Khare, Qinghong Dan, Raquel Benítez, Mercédesz Praszner, Xuewen Song, Rola Saleeb, Boris Hinz, York Pei, Katalin Szászi, András Kapùs
This study identifies MRTF as a key mediator of fibrosis in PKD by showing its activation following PC1/2 loss and its role in epithelial fibrogenesis.
Cells · Jun 5, 2024Peer-reviewedCell Biology
Ccrk-Mak/Ick kinase signaling axis is a ciliary transport regulator essential for retinal photoreceptor maintenance
Taro Chaya, Yamato Maeda, Ryotaro Tsutsumi, Makoto Ando, Yujie Ma, Naoko Kajimura, Teruyuki Tanaka, Takahisa Furukawa
This study identifies the Ccrk-Mak/Ick kinase signaling axis as an essential regulator of intraflagellar transport in retinal photoreceptors, showing its role in preventing retinal degeneration.
bioRxiv · May 24, 2024 · PreprintDevelopmental Biology
Differential modulation of sensory response dynamics by cilia structure and intraflagellar transport within and across chemosensory neurons
Alison Philbrook, Michael P. O’Donnell, Laura Grunenkovaite, Piali Sengupta
This study investigates how cilia structure and intraflagellar transport (IFT) differentially modulate chemosensory responses in C. elegans neurons.
bioRxiv · May 16, 2024 · PreprintNeuroscience
TUBB4B variants specifically impact ciliary function, causing a ciliopathic spectrum
Daniel O Dodd, Sabrina Méchaussier, Patricia Levy Yeyati, Fraser McPhie, Jacob R. Anderson, Chen Jing Khoo, Amelia Shoemark, Deepesh Kumar Gupta, Thomas Attard, Maimoona A. Zariwala, Marie Legendre, Diana Carolin Bracht, Julia Wallmeier, Miao Gui, Mahmoud R. Fassad, , Pleasantine Mill
The paper identifies TUBB4B mutations causing distinct ciliopathic diseases by affecting microtubule dynamics and cilia formation in humans and mice.
Science · Apr 25, 2024Peer-reviewedGenetic & Genomic Medicine
The ANKS3/BICC1 protein complex is a master post-transcriptional regulator of NPHP1 ciliopathy gene transcripts
Alexia Mahuzier, Gweltas Odye, Valentina Grampa, Albane A. Bizet, Amandine Viau, Rebecca Ryan, Manon Mehraz, Thierry Blisnick, Euan Clark, Charline Henry, Rémi Piedagnel, Flora Silbermann, Gaëlle Hayot, Line De grande, Agathe Kahn, , Sophie Saunier
The paper identifies ANKS3/BICC1 as a post-transcriptional regulator of NPHP1 transcripts, linking it to ciliopathy phenotypes through transcript decay and ciliary dysfunction.
bioRxiv · Apr 18, 2024 · PreprintPathology
Interaction between ciliary component proteins from Chlamydomonas revealed by CRISPR/CAS9, cryo-electron tomography and mass spectrometry
Leo Luo, Noemi Zimmermann, Akira Noga, Alexander Leitner, Takashi Ishikawa
The paper investigates protein interactions in cilia using CRISPR/CAS9, cryo-ET, and mass spectrometry, revealing a complex involving FAP263, FAP78, FAP184, and FAP151, and links it to dynein f phosphorylation.
bioRxiv · Apr 2, 2024 · PreprintCell Biology