C. elegans E3 ubiquitin ligase EBAX-1 promotes non-apoptotic linker cell-type death through target-directed miRNA degradation
Lauren Bayer Horowitz, Olya Yarychkivska, Yun Lü, Shai Shaham
bioRxiv · Jan 8, 2026 · PreprintDevelopmental Biology
Topic · Molecular Biology · Biochemistry, Genetics and Molecular Biology
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
211 papers
Lauren Bayer Horowitz, Olya Yarychkivska, Yun Lü, Shai Shaham
bioRxiv · Jan 8, 2026 · PreprintDevelopmental Biology
Maddalena Nano, Jacob Harwood, Gabriel H. Lukaszewicz, Alexander Kagan, Leonid Peshkin, Denise J. Montell
This study identifies kinases involved in cellular recovery after caspase activation using a kinome inhibitor screen, revealing roles for adhesion, cytoskeleton, and growth factor signaling.
bioRxiv · Jan 7, 2026 · PreprintCell Biology
Jessica A. Buchanan, Olivia Lavidis, Nicholas J. Shields, Katriona Harrison, Huy T. Nguyen, Richard J. Payne, Toby Passioura, Megan C. Steain, Margaret Sunde
The paper identifies cyclic peptides that bind RIPK3's RHIM-containing region, enabling visualization of its monomeric and functional amyloid conformations in live cells.
Biochemical Journal · Jan 7, 2026Peer-reviewedBiochemistry
Christina Elsner, Ludovica Martina Epasto, Adeline Cieren, Dominik Gendreizig, Svetlana Kucher, Daniel Roderer, Enrica Bordignon
This study characterizes how full-length recombinant Bcl-xL monomers inhibit apoptosis through direct and indirect mechanisms using in vitro and organelle assays.
ChemBioChem · Jan 1, 2026Peer-reviewedBiophysics
Toshiaki Shigeoka, Hiroyuki Nagaoka, Nunuk Aries Nurulita, Shogo Tada, Yasumasa Bessho, Yasumasa Ishida, Eishou Matsuda
This study identifies Zbtb38 as a transcriptional activator of XIAP, showing its role in regulating apoptosis during development and cancer, with implications for therapeutic targeting.
Journal of Molecular Cell Biology · Jan 1, 2026Peer-reviewedCell Biology
Zhi Zhang, Liujuan Zhou, Chenyi Liao, Fujiao Lv, Fei Qi, Lingyu Du, Justin P. Pogmore, Juan delRosaio, David William Andrews, Bo OuYang, Jialing Lin
This paper presents a high-resolution NMR structure of Bax helix 9, showing its role in dimerization and pore formation during apoptosis, supported by mutagenesis and simulations.
bioRxiv · Dec 30, 2025 · PreprintBiochemistry
Maria Davern, Cole J. Turner, Daryl Griffin, Lara Bencsics, Brenda C. Chan, Jasmine Yun-Tong Kung, Michael Olson, Cheyanne Walker-Williams, Shaili Soni, Leah Krotee, Michael Yorsz, Gabriella Antonellis, Patrick Hall Lizotte, Cloud Peter Paweletz, Jeremy A. Ryan, , Anthony G. Letai
This study identifies common survival mechanisms between drug-tolerant persisters and immunotherapy persisters, showing they share reduced mitochondrial apoptotic sensitivity and cross-resistance to therapies.
Cell Death and Differentiation · Dec 26, 2025Peer-reviewedCancer Biology
Jenny Geiger, Fabian Klötzer, Nadine Pollak, Gavin Fullstone, Markus Rehm
This study shows stochasticity in protein distributions and interactions contributes to heterogeneity in mitochondrial MOMP during apoptosis, affecting both minority and majority MOMP scenarios.
Cell Death and Disease · Dec 19, 2025Peer-reviewedCell Biology
Juan Manuel García-Arias, Rafael Alejandro Juárez-Uribe, Luis Alberto Baena-López, Ginés Morata, Ernesto Sánchez‐Herrero
This study identifies Hipk as a regulator of Dronc stability and apoptotic signaling in Drosophila, revealing a feedback loop between Hipk and Dronc.
Cell Death Discovery · Dec 16, 2025Peer-reviewedDevelopmental Biology
Habitha Sri Prabhakaran, Neil Alan Cross
This study evaluates the combination of epigenetic modifiers with an anti-DR5 agonistic mAb to enhance anti-cancer efficacy in osteosarcoma cell lines.
bioRxiv · Dec 13, 2025 · PreprintCancer Biology
Olya Yarychkivska, Simin Liu, Lauren Bayer Horowitz, Shiloh Newland, Peipei Wu, Saiya Mittal, Shogo Tamura, Tetiana Novosolova, David Faulkner Ritter, Yun Lu, Sevinç Ercan, Christopher M. Hammell, Shai Shaham
The paper identifies MYRF-1 as a regulator of non-apoptotic linker cell death in C. elegans, showing its role in priming death through activation of pqn-41/polyQ.
bioRxiv · Dec 11, 2025 · PreprintCell Biology
Andrea Puebla-Huerta, Pablo Morgado-Cáceres, Camila Quezada- Gutierez, César Casanova-Canelo, Roberto Rosales-Rojas, José Alberto López-Domínguez, Inés Marin, Sandra Aurora Niño, Pablo Cruz, Micheel Saldivia-Piña, Sergio Linsambarth, Osman Díaz- Rivera, Oscar Cerda, Ariela Vergara-Jaque, Manuel Serrano, , J. César Cárdenas
This study identifies Bcl-xL-VDAC1 interaction as a mechanism that reduces mitochondrial Ca2+ uptake, promoting therapy-induced senescence by preventing apoptosis.
bioRxiv · Dec 8, 2025 · PreprintCell Biology
Tslil Braun, Naama Afgin, Lena Sapozhnikov, Ehud Sivan, Andreas Bergmann, Luis Alberto Baena-López, Keren Yacobi-Sharon, Eli Arama
This study identifies Dronc-driven compensatory proliferation in Drosophila wing imaginal discs after ionizing radiation, revealing molecular mechanisms and interactions that maintain tissue regeneration balance.
Nature Communications · Dec 4, 2025Peer-reviewedDevelopmental Biology
Nathan Rather, Aladin Elkhalil, Melvin Williams, Karen Juanez, Rashna Sharmin, Ginger Clark, Shai Shaham, Piya Ghose
This study identifies EOR-1/PLZF as a regulator of WAH-1/AIF, which sequentially promotes non-apoptotic corpse removal during development.
Cell Death Discovery · Nov 28, 2025Peer-reviewedCell Biology
Kaitlin Long, Debanjan Bhattacharjee, Samuel H. Newman-Stonebraker, Simon Suhr, Brandon Q. Mercado, Emily Scheib, Anthony Tighe, Luciano Romero, Sarah L. Thompson, Erin L. Sausville, Kristen M. John, Linda Julian, Sanat Mishra, Olaf Klingbeil, Punya Gupta, , Jason M. Sheltzer
This study reveals that PAC-1, a clinical-stage oncology compound, targets drug-resistant cancers by disrupting iron homeostasis and exploiting MDR1 expression to induce iron depletion.
bioRxiv · Nov 26, 2025 · PreprintCancer Biology
Qiuyun Yang, Yang Chen, Yang Shen, Xiao Zhang, Xianliang Chen, Xinnan Zhao, Ruixuan Yuan, Mingqiang Li, Yang Xu, Xilong Lin, Yihan Sun, Shengyuan Zuo, Xinyang Liu, Zhuo Li, Ying Chen, , Xiameng Chen
This paper defines and validates a new form of cell death called Ferrapoptosis, which combines features of ferroptosis and apoptosis in traumatic brain injury, and identifies Smg7 as a key regulator.
bioRxiv · Nov 25, 2025 · PreprintCell Biology
This study uses mathematical modeling to show that BCL-2 network architecture enables tristability in cell-fate decisions, with stochastic fluctuations driving heterogeneous outcomes.
npj Systems Biology and Applications · Nov 22, 2025Peer-reviewedSystems Biology
Laurent Maillet, Aurélie Fétiveau, Lisenn Lalier-Bretaudeau, Nena Martin, Sophie Barillé‐Nion, Catherine Guette, Fabien Gautier, Stéphane Télétchéa, Philippe Paul Juin
The paper shows that tail anchors of BCL-xL and PUMA modulate BH3-in-groove interactions, affecting BH3 mimetic antagonism and cell survival.
Nature Communications · Nov 22, 2025Peer-reviewedCell Biology
Milena Wessing, Sophie Klaßen, Britta Fiedler, Katia Cosentino, Joost C. M. Holthuis
This study challenges models of ceramide-induced apoptosis by showing ceramides cannot form channels or substitute for cardiolipin in Bax pore formation.
bioRxiv · Nov 14, 2025 · PreprintBiochemistry
Charmain F. Johnson, Christopher M. Schafer, Kathryn Young Burge, Brian G. Coon, Hala Chaaban, Courtney T. Griffin
This study shows that endothelial RIPK3 reduces vascular permeability and inflammation in ischemia-reperfusion injury by regulating IL-6 secretion and adhesion molecule expression.
Arteriosclerosis Thrombosis and Vascular Biology · Oct 30, 2025Peer-reviewedPathology
Melina Daniilidis, Umut Günsel, George Broutzakis, Kira D. Leitl, Robert Janowski, Kai Fredriksson, Dierk Niessing, Christos Gatsogiannis, Franz Hagn
This study reveals how VDAC1 oligomerization triggers apoptosis by exposing its N-terminal helix, which neutralizes anti-apoptotic BclxL and promotes pore formation by Bak.
Nature Communications · Oct 27, 2025Peer-reviewedBiophysics
Alicia C. Borgeaud, Iva Ganeva, Calvin Klein, Amandine Stooss, Daniela Ross‐Kaschitza, Liyang Wu, Joel S. Riley, Stephen W. G. Tait, Thomas Lemmin, Thomas Kaufmann, Wanda Kukulski
The paper shows that Apaf1 forms transient foci during apoptosis, which correspond to the apoptosome and regulate apoptosis progression.
Nature Communications · Oct 24, 2025Peer-reviewedCell Biology
Anastasia Piskopou, Isabella Vinson, Kong Sit, Els Sweep, Maarten A. F. Altelaar, Kelly E. Stecker
The paper identifies GDF15 as a negative regulator of necroptotic cell death by directly interacting with RIPK3, enhancing necroptosis in tumor cells.
bioRxiv · Oct 23, 2025 · PreprintCell Biology
Jiachen Shi, Weile Liu, Alison Song, Timi Sanni, Amy Lynnette Van Deusen, Eli R. Zunder, Christopher D. Deppmann
This study uses single-cell mass cytometry to show that deleting RIPK3 and Caspase-8 increases cell count in the mouse telencephalon, indicating non-exclusive roles for extrinsic apoptosis and necroptosis in developmental cell elimination.
Cell Death and Differentiation · Oct 21, 2025Peer-reviewedDevelopmental Biology
Rudi Mao, Hongwei Pan, Luyu Yang, Zhenyu Fan, Yanfeng Li, Xinran Yu, Zhen Li, Ying Chen, Yang Yu, Wei Wang, Chengjiang Gao, Jun Peng, Tao Xu, Yi Zhang, Xiaopeng Qi
This study identifies Bergeyella cardium variant-induced cytoplasmic vacuolization cell death and shows SLC9A9 and OMVs play key roles in this process.
Cell Discovery · Oct 21, 2025Peer-reviewedCell Biology
Tomoyuki Tajima, Yoshifusa Kondo
This study identifies a unique low molecular weight substance (CSS) produced by cancer cells that exerts cytocidal effects on other cancer cells and extends lifespan in mice.
bioRxiv · Oct 20, 2025 · PreprintCancer Biology
Olya Yarychkivska, Lena M. Kutscher, Betty Ortiz Bido, Juliana Kagan, Yoon A. Kim, Dana Mamriev, Yun Lu, Elli Puscher, Wolfgang Keil, Sarit Larisch, Shai Shaham
The paper shows that CED-3 caspase in C. elegans promotes non-apoptotic linker cell dismantling but not death onset, and reveals similar mechanisms in mouse cells.
bioRxiv · Oct 15, 2025 · PreprintCell Biology
Sławomir Andrzejewski, Marie Winter, Leandro Encarnação Garcia, Olusiji Alex Akinrinmade, Francisco Madeira Marques, Emmanouil Zacharioudakis, Anna Skwarska, Julio A. Aguirre‐Ghiso, Marina Y Konopleva, Guangrong Zheng, Susan Fineberg, Daohong Zhou, Evripidis Gavathiotis, Tao Wang, Eugen Dhimolea
This study identifies OXPHOS-high quiescent triple-negative breast cancer cells that survive chemotherapy and depend on BCL-XL for survival, showing that targeting BCL-XL enhances chemotherapy efficacy.
Cells · Oct 8, 2025Peer-reviewedCancer Biology
Kévin Berthenet, Serena Diazzi, Catherine Jamard, Kinga B. Stopa, Clara Gil, Stefan Dragan, Deborah Fanfone, Trang Thi Minh Nguyen, Nathalie Al, François Virard, Olivier Meurette, Nikolay Popgeorgiev, Héctor Hernández‐Vargas, Julien Ablain, Gabriel Ichim
This study identifies a non-apoptotic role for caspase-3 in melanoma cell motility by regulating coronin 1B activity, suggesting it as a potential target for anti-metastatic therapies.
Cell Death and Disease · Oct 6, 2025Peer-reviewedCancer Biology
Jingjing Zhang, Huijie Yu, Yuxin Yang, Ajie Liu, Peng Wang
This study investigates how RIPK3 regulates necroptosis and CaMKII activity in hypertrophic cardiomyocytes, showing that inhibiting RIPK3 alleviates myocardial hypertrophy and oxidative stress.
bioRxiv · Sep 29, 2025 · PreprintCell Biology